Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04210 1213 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G63700 100 / 2e-21 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT4G31170 97 / 8e-21 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 96 / 1e-20 Protein kinase superfamily protein (.1) AT3G50720 95 / 2e-20 Protein kinase superfamily protein (.1) AT5G66850 95 / 1e-19 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G53570 93 / 5e-19 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G62400 90 / 8e-19 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G08500 91 / 2e-18 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G53165 87 / 4e-17 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158600 [exp] 1839 / 0 AT1G04210 1172 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G039800 [exp] 103 / 2e-22 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 102 / 5e-22 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 102 / 7e-22 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.018G001800 [exp] 98 / 3e-21 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 100 / 5e-21 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 97 / 5e-21 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.001G102900 [exp] 99 / 8e-21 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 96 / 9e-21 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041180 [exp] 1326 / 0 AT1G04210 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021899 [exp] 739 / 0 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021898 [exp] 516 / 7e-174 AT1G04210 447 / 4e-148 Leucine-rich repeat protein kinase family protein (.1) Lus10027496 [exp] 104 / 2e-22 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 101 / 2e-21 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002374 [exp] 95 / 4e-21 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10000237 [exp] 94 / 4e-21 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 96 / 1e-20 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10042122 [exp] 96 / 1e-20 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10021766 [exp] 98 / 2e-20 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.010G081400.2 pacid=42797665 polypeptide=Potri.010G081400.2.p locus=Potri.010G081400 ID=Potri.010G081400.2.v4.1 annot-version=v4.1 ATGCAGCCTTCCAATTCCACCGGATCCAATTCGAATTCCACCGATAACCCCGAAAACCTTAAATCCTCAAAATCACCCTCCACTGAATTCAATGCCACCG CAACAGAAAACAGTCACAATCATGTCGAAAAAAGAAGTGCTAACGTGGATGATGAGTTGGTTCTTGATGTTACAGGCAAAAGCTTGGAATTTGATTTACT AGAAAAATCTGATGATTCAGTTGAGGGTTTGTATTTGTATAAGAATGCCTTTAGTTTGGTGCCCAAGTCGGTGGGCGGGTTAAAAAAATTGAGGACGGTC AAGTTTTTTGGGAATGAAGTGAATTTGTTTCCGGCGGAGTTTGGGAATTTGGTGGGATTGGAGTGCTTGCAAGTCAAAGTATCATCGCCGGGGTTGAATG GCTTGAATTTTAGTAAATTCAAAGGGTTGAAAGAGCTTGAGCTCTCGAAAGTGCCGCCAAGACCTTCGGTTTTGACGATTTTGAGTGAGATTTCTGGGAT TAAGTGCTTGACAAAGCTCTCTGTGTGTCACTTCTCTATAAGATATCTTCCTCCCGAAATTGGCTGCTTAAGTAACTTGGAGTACTTGGATCTTTCATTC AACAAGATAAAGAGTCTGCCAAATGAAATAACTTATTTAAATGCCTTGATATCATTAACAGTATCTAATAATAAGTTAGTTGAACTACCCTCAAGTTTGT CCTCATTGCAAAGATTGGAGAGTTTGGACCTGTTAAATAACAGGCTGACGTCACTGGGATCTCTTGAACTTACTTCAATGCATAGCCTCCAGTATTTAAA TCTTCAGAACAATAGGCTACTCAGCTGTTGTCAAATACCTTCATGGATATGCTGCAAATTGGAAGGAAATGGAAAGGACTTATCAAATGATGATTTCATT AGCTCTTCAGTTGAAATGGACGTGTACGAAGCCTCCTTTCAGGACGATGGCAATAATTTTTCTTGTAATGGTTCCAATCATGCTGCATCAAGCATAGTGA CTGTGCCTTCATCAAACAGCAGATGCTTTGCAACTCGGAGGTCCAGTAAGCGGTGGAAACGGCGACATTATTTGCAACAAAAAGCTCGTCAAGAACGATT AAACAACAGCAGGAAGTGGAAAGGTGAGGGCCATGCTGAAGCTTTGGATCTGAAGGAAAGTGAAAGTTTCAAATTGAACAATCTTGATGTCCGTAACTTC GAGATTTGTGAAGAGGGTATATCAGACATCGCAGGTCTGGATGATGATGATGATGGCGAAAAAGTTGAACTTTCTGGAGAAGCTGAAGTCGAAAATCTTC TTATCAGTGTTGAAGCTGATAAAATCAGCTCAAAAAAGGGTGTGGAAAGCTGCTCATGCGACCTTGGGTCTATAAATAAAAATGAGGAAGAAGTATGTTG TGTGCAAGATGAATCTCTAGGCCCTTTACAGGGTGAAGCTGGTAGTCAGGATGAAAATCCATCTTCAGAAAAATCCAAAATCACCTACAAGTCAAAAAGG CATTATGATATGGATCTTGATAATCCAAAACCATGTAAATGTCGGAGACCAACAGAAGATAGCTCAAGATTGTCTCGCAAATATAGCAACCTTTCTTTTT GCAGCATTGAGGACCGACTACCAGATGGCTTTTATGATGCAGGACGTGACCGACCTTTCATGCCACTGAGGAATTTTGAGCAAATCTTGTCTCTTGACTC ACGCGAGGTCATTCTTTTGGACAGGGAGAAGGATGAACAGTTGGATGCAATAGCTCTCTCTGCTCAAGCATTGGTGTACCGTTTGAAGAGATTAAATGGT TCTACCAAGGAGAGGAATAAGGTTGCTGTTGATAACTTGCAGATTGCATCATTGCTTGCACTTTTTGTTTCTGATCATTTTGGGGGCAGTGATAGAAGTG GTGCTGTTGAAAGGACAAGAAAAGCAGTGTCTGGTTCAAACTACAGGAAGCCTTTTGTTTGCACATGCTCAACTGGAAATAATGAAAGTATCAGCTCTGC TGGTAAACAGACTTTGGAAACTGTAGACGATATTTTTTTCTCCGATCTCTGTGAGAGATCTTTGCGATCTATTAAAGCAAGACGAGGTTCCATTGTGATT CCTTTAGGGAGCTTGCAGTTTGGTGTTTGTAGACACAGAGCGTTGCTAATGAAGTATCTATGTGACCGAATGGATCCTCCATTACCTTGTGAACTTGTCC GGGGTTACTTGGACTTCACGCCACATGCGTGGAATGTCATTCTCAGCAGGAGGGGTGATTCACTGGTCCGGATGGTGGTGGATGCATGCCGTCCACATGA TATTAAAGAAGAAACAGATCTGGAATACTTTTCCAGGTATGTTCCACTCAGTCGGGCTGAAGTTCCCCTTTCAACCAAGAGCATTACCAGTCCTGGTTGT TCATTTCCTTCTTTGTCAACATCTGATGAGATAGGAAAGGTGGGTTCCAGTACTCTTATTCGGTGCAAATTTGAATCTGTTGAAGCTGCAGCAAAGGTGC GTACTTTAGAGGTGTGTGAGGCTTCAGCAGATGAAATTAGGAATTTTGAATATAGTTGTCTCGGAGAAGTAAGAGTTTTAGGTGTGCTACAACACTCTTG CATAGTTGAAATGTATGGACACCAGCTATCTTCAAAATGGATTCCATCGGAAGATGGAAATCCAGAACGCCGCATATTACAGTCTGTTATTCTTATGGAG TATGTTAACGGGGGATCTTTAAAGAATTATGTAGAGGAGTTATCAAAAACTGGCGAGAAGCATGTACCAGTGGAGATGGCATTGTGTATAGCACGAGATG TTGCATGTGCATTGGCAGAGATTCACTCCAAAGATATAATTCATCGTGACATAAAAAGTGAAAATATTTTGATTGATTTGGATAATAAGAGAGCTGATGG CATGCCTTTAGTGAAGCTCTGTGATTTTGACAGAGCTGTGCCACTCAGGTCTCTCTTGCATACGTGTTGTATTGCTCATAGAGGTATTGCACCTCCTGAT GTTTGTGTTGGAACACCACGATGGATGGCTCCAGAGGTTTTGCGGGCAATGGATAAACGCAGCACATATGGTCTGGAAGTGGATATTTGGTCATATGGAT GCCTGCTTCTGGAATTGTTGACTTTACAGGTCCCATATTCCGGCTTACCTGACCTACACATACACGAGCTTCTACAGTCAGGTAAACGACCACCACTAAC TGATGAGCTAGAGGCATTGGGATCCATTGACGAGCATTTGGTGACTCAGTCTGGCTCAGATCTGGAGGGACCTGAGGTTGAGTCAGAAACTCTGAGATTC CTTGTTGATTTATTCTGTCAATGCACCAAGGAAAATCCAGCTGACCGTCCCACAGCTTCAGACATTTACAAATTGTTGCTTGCACGCACAAGCATTAACT AG
AA sequence Show only first row Show all	>Potri.010G081400.2 pacid=42797665 polypeptide=Potri.010G081400.2.p locus=Potri.010G081400 ID=Potri.010G081400.2.v4.1 annot-version=v4.1 MQPSNSTGSNSNSTDNPENLKSSKSPSTEFNATATENSHNHVEKRSANVDDELVLDVTGKSLEFDLLEKSDDSVEGLYLYKNAFSLVPKSVGGLKKLRTV KFFGNEVNLFPAEFGNLVGLECLQVKVSSPGLNGLNFSKFKGLKELELSKVPPRPSVLTILSEISGIKCLTKLSVCHFSIRYLPPEIGCLSNLEYLDLSF NKIKSLPNEITYLNALISLTVSNNKLVELPSSLSSLQRLESLDLLNNRLTSLGSLELTSMHSLQYLNLQNNRLLSCCQIPSWICCKLEGNGKDLSNDDFI SSSVEMDVYEASFQDDGNNFSCNGSNHAASSIVTVPSSNSRCFATRRSSKRWKRRHYLQQKARQERLNNSRKWKGEGHAEALDLKESESFKLNNLDVRNF EICEEGISDIAGLDDDDDGEKVELSGEAEVENLLISVEADKISSKKGVESCSCDLGSINKNEEEVCCVQDESLGPLQGEAGSQDENPSSEKSKITYKSKR HYDMDLDNPKPCKCRRPTEDSSRLSRKYSNLSFCSIEDRLPDGFYDAGRDRPFMPLRNFEQILSLDSREVILLDREKDEQLDAIALSAQALVYRLKRLNG STKERNKVAVDNLQIASLLALFVSDHFGGSDRSGAVERTRKAVSGSNYRKPFVCTCSTGNNESISSAGKQTLETVDDIFFSDLCERSLRSIKARRGSIVI PLGSLQFGVCRHRALLMKYLCDRMDPPLPCELVRGYLDFTPHAWNVILSRRGDSLVRMVVDACRPHDIKEETDLEYFSRYVPLSRAEVPLSTKSITSPGC SFPSLSTSDEIGKVGSSTLIRCKFESVEAAAKVRTLEVCEASADEIRNFEYSCLGEVRVLGVLQHSCIVEMYGHQLSSKWIPSEDGNPERRILQSVILME YVNGGSLKNYVEELSKTGEKHVPVEMALCIARDVACALAEIHSKDIIHRDIKSENILIDLDNKRADGMPLVKLCDFDRAVPLRSLLHTCCIAHRGIAPPD VCVGTPRWMAPEVLRAMDKRSTYGLEVDIWSYGCLLLELLTLQVPYSGLPDLHIHELLQSGKRPPLTDELEALGSIDEHLVTQSGSDLEGPEVESETLRF LVDLFCQCTKENPADRPTASDIYKLLLARTSIN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	2.44	0.9248
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	3.16	0.9237	Pt-LD.2
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	3.46	0.9231
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	3.46	0.9111
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	6.48	0.8966
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	7.41	0.9087
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	7.41	0.8829
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	9.94	0.8883
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.006G065000 [exp]	12.08	0.8287	Pt-ATMAK10.3
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	12.48	0.8581

Compare expression of checked genes

Potri.010G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.