Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22845 365 / 2e-130 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G07680 119 / 1e-33 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 64 / 3e-12 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 63 / 5e-12 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 59 / 2e-10 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 50 / 1e-07 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369000 [exp] 118 / 4e-33 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 63 / 7e-12 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 61 / 3e-11 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 59 / 1e-10 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 54 / 6e-09 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 49 / 3e-07 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 45 / 1e-05 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 45 / 1e-05 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039381 [exp] 368 / 3e-131 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10006623 [exp] 367 / 6e-131 AT3G22845 349 / 5e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041182 [exp] 366 / 1e-130 AT3G22845 350 / 2e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10021900 [exp] 363 / 1e-129 AT3G22845 348 / 9e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022525 [exp] 124 / 2e-35 AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10032588 [exp] 120 / 2e-33 AT3G07680 305 / 3e-106 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10016624 [exp] 119 / 2e-33 AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10043160 [exp] 122 / 4e-32 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10035821 [exp] 111 / 2e-30 AT3G07680 254 / 1e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036603 [exp] 110 / 5e-30 AT3G07680 259 / 9e-89 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [poplar] [flax] GOLD-like PF01105 [poplar] [flax] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Potri.010G081700.2 pacid=42797318 polypeptide=Potri.010G081700.2.p locus=Potri.010G081700 ID=Potri.010G081700.2.v4.1 annot-version=v4.1 ATGGAGAGGAGGAGAAAGCAGATCTACGTAGTGGCAGCTCTTTTAATGAGCTTTATTAGCCGCATCTATTCTCTCTCCGTCACCGTAAACGACGTCGAAT GCGTTTACGAGTATGTCCTCTATGAAGGCGACACCGTTTCCGGAAACTTCGTTGTTGTCGATCACGACATCTTCTGGGGCTCCGATCACCCCGGCATCGA TTTCACTGCAACATCTCCTGGAGATAATACGGTGCACACTGTAAAGGGGACATCTGGAGATAAGTTTGAGTTCAAGGCTCCAAGAAGTGGAATGTACAAA TTTTGTTTTCACAATCCCTACGCAACACCTGAGACTGTCTCGTTTTATATTCATGTGGGCCATATTCCCAGCGAGCATGACCTTGCCAAAGATGAGCATT TGAACCCAGTTAATGTTAAAATTGCTGAGCTGAGGGAGGCATTGGAGTCTGTTACAGCAGAGCAGAGGTACTTGAAAGCCCGTGATATTCGACATCGTCA CACTAATGAGAGCACAAGAAGGCGTGTCATAGCCTACACAGTTGGAGAGTACCTTTTGCTGGCCGCTGCCAGCACACTCCAAGTCGTGTATATCCGTCGT CTCTTCAGCAAGTCAGTGGCATATAACAGGGGTTTGAGCCCTGATTAA
AA sequence Show only first row Show all	>Potri.010G081700.2 pacid=42797318 polypeptide=Potri.010G081700.2.p locus=Potri.010G081700 ID=Potri.010G081700.2.v4.1 annot-version=v4.1 MERRRKQIYVVAALLMSFISRIYSLSVTVNDVECVYEYVLYEGDTVSGNFVVVDHDIFWGSDHPGIDFTATSPGDNTVHTVKGTSGDKFEFKAPRSGMYK FCFHNPYATPETVSFYIHVGHIPSEHDLAKDEHLNPVNVKIAELREALESVTAEQRYLKARDIRHRHTNESTRRRVIAYTVGEYLLLAAASTLQVVYIRR LFSKSVAYNRGLSPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Potri.010G081700 [exp]	0	1
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Potri.014G122800 [exp]	2.00	0.9019
AT1G27330			Ribosome associated membrane p...		Potri.003G171100 [exp]	3.74	0.8723
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Potri.010G217800 [exp]	4.79	0.9138
AT2G20820			unknown protein		Potri.019G109100 [exp]	5.47	0.9065
AT5G14030			translocon-associated protein ...		Potri.017G061900 [exp]	6.16	0.9122
AT3G52730			ubiquinol-cytochrome C reducta...		Potri.004G188700 [exp]	9.89	0.8933
AT5G44710			unknown protein		Potri.003G155000 [exp]	10.39	0.8841
AT1G01170			Protein of unknown function (D...		Potri.006G051900 [exp]	11.40	0.8527	ATOZI1.1
AT1G69460			emp24/gp25L/p24 family/GOLD fa...		Potri.010G164600 [exp]	12.12	0.8282
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Potri.001G031500 [exp]	12.40	0.8562	Pt-PNT1.1

Compare expression of checked genes

Potri.010G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.