Plant FIBer expression Database

Potri.010G081800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04200 988 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039377
[exp]
1077 / 0 AT1G04200 993 / 0.0 unknown protein
Lus10006619
[exp]
1065 / 0 AT1G04200 991 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0456 Golgi_traff PF09742 Dymeclin Dyggve-Melchior-Clausen syndrome protein
Representative CDS sequence
>Potri.010G081800.1 pacid=42799648 polypeptide=Potri.010G081800.1.p locus=Potri.010G081800 ID=Potri.010G081800.1.v4.1 annot-version=v4.1
ATGGGAGCAGTGCCTTCTACGCCGCGTCTCTCCGGCGCTCGCCCTCAGGACACGGCCGATTATTTAATCGGTTCATTTGTCGGTGAGAAGACGTTTCCTA
TAGGTTCTGACTTCTGGCAGAAACTTCTCGAACTCCCTCTCAATCTCCATTGGCCTACTCACCGTGTTCAAGAAGCCTGCAAGCTCTTCGCACAAAATAA
TTGTAATACAAGGCATCTAACGAAGATTTTGATTCACTTATCGTGGTGTTTGCAAGAGTGTGTTTCGAATTCCGGTGCCCCGTCGGAAGTTTATGAGAAG
GCTGTTAATGCGGTGTACATTTCATCAGTTTTTTTAAAGTATTTAATCGAAAATGCTCAAAGCAATAGCATCGAGGAATTTCATTTGTCATTGAATGAGA
GCGAGCCAGCACCGAATGGTTTCAAAACAGATCAAAACATCGAGAGTCTTGTCATGCATAATGTGCTTAACTTTATTGGTTCCGTAGAAGTAAGTCCGAA
GACATACCTTCTACATCATGAGTTACTCAATTTCATGCTTGTTGCAATGTCAACCCAACTTCTCTATGGGCCAGCACCAGGACCGACTGATATGAACCCT
TTTATTGATGCAGCAATGGCTCAGGAAAGTTCTTTGGTTGGTTTGGTTGTTCGGAGATTGCTACTTAATTATATAATACGACCTCGTATCCCATATAACA
GCGCATCATACCCAGTATTTTCTGGTGGGAGTCAGCCTGGAGTTTTGCAAAGAGTTGGTTCTGCAGCTGCCACTCTTGTTTTATTGCCATTCAATTATTT
GGTCAGTTCAACTGGTGATGGCTCAAGAAATCCATTGGCAGACAGCAGTCTTCATGTGCTGCTTATACTTAATTATTATCATAAGTGTGTTGTGGGTGAT
GAGTCCCTGACAGACAGAAGTGATGACAGTGCCACTTCAGATTCTCTCTCCAAAGGAAAAACATACTTCTCTGACAATCCTTACTGCAAAGCCTTAGAAA
ATGCAAGGGATATAGAATTTGATCGTGTAGATATCGAGGGGAATGCGCACAGTGGGTCACATGTGAGATTGCCATTTGCATCTCTGTTTGATACTCTTGG
CATGTGCTTGGCTGATGAAACTGCAGTCCTATTGCTTTACACATTGGTGCATGGAAACTCTGACTTTTTGGAGTATGTTTTAGTGAGAACGGATCTGGAT
ACATTGTTAATGCCAATTCTGGAAACGCTGTACAGTGCTTCAAAGAGGACGTCCAATCACATATACATTTTGCTGATTATACTTCTTATACTTAGTCAGG
ATTCATCTTTTAATGCAAGCATTCACAAGATAGTACTGCCAAGCATTCCATGGTATCAAGAACACCTTCTTCATCGAACATCCCTTGGTTCCCTAATGGT
CATAATTCTTATAAGAACAGTGAAGTATAATCTATCTAAGCTGCGGGATCTCTATCTTCATACAACTTGTCTAGCAACTTTAGCAAACATGGCTCCTCAT
TTTCATCATTTGAGTGCATATGCATCACAGAGACTTGTTAGCCTATTCTATATGCTCTCACGCAAGTATAACAAACTTGCAGAACGGATAGATGATAAAA
TGGGGAAGAGTGGCTCTTTGGGGCAAGACAGCCTTGCTGAAGATCTGTCGGCAGAGTTGCATATTTACACGGACTTCTTGAGAATTGTCCTCGAAATATT
AAATGCAATTTTGACTTATGCCTTGCCACGCAATCCCGAGGTTGTATATGCAATAATGCACAGGCAAGAGGTTTTTGAGCCATTCAAGAATCATCCGCGC
TTCAGTGAACTGATTGAAAATATTTACATGGTTTTAGATTTTTTCAATAGTCGCATCGATTCCCAAACACATGATGGTGAATGGTCAGCGGAGAAAGTCC
TCCAACTCATAATTATGAATTGTCGATCATGGCGGGTTGAAGGCATGAAGATGTTTACTCAATTGCATTTCTCATATGAACAAGAGAGTCACCCAGAGGA
GTTCTTTACACCATACATTTGGCGCGTTGCTTTATCCCAACGTGGACTGAGCTTTGATCCCAGTGCCATAAATCTGTTTCCAGTTGATCTGCCAATAGAG
AAACCAAATGATGACGTTGATGATCAAAGTAAATTTCAAAACACGAATCTGAATGAACACAGGGTACTGCTTGACCTGTAG
AA sequence
>Potri.010G081800.1 pacid=42799648 polypeptide=Potri.010G081800.1.p locus=Potri.010G081800 ID=Potri.010G081800.1.v4.1 annot-version=v4.1
MGAVPSTPRLSGARPQDTADYLIGSFVGEKTFPIGSDFWQKLLELPLNLHWPTHRVQEACKLFAQNNCNTRHLTKILIHLSWCLQECVSNSGAPSEVYEK
AVNAVYISSVFLKYLIENAQSNSIEEFHLSLNESEPAPNGFKTDQNIESLVMHNVLNFIGSVEVSPKTYLLHHELLNFMLVAMSTQLLYGPAPGPTDMNP
FIDAAMAQESSLVGLVVRRLLLNYIIRPRIPYNSASYPVFSGGSQPGVLQRVGSAAATLVLLPFNYLVSSTGDGSRNPLADSSLHVLLILNYYHKCVVGD
ESLTDRSDDSATSDSLSKGKTYFSDNPYCKALENARDIEFDRVDIEGNAHSGSHVRLPFASLFDTLGMCLADETAVLLLYTLVHGNSDFLEYVLVRTDLD
TLLMPILETLYSASKRTSNHIYILLIILLILSQDSSFNASIHKIVLPSIPWYQEHLLHRTSLGSLMVIILIRTVKYNLSKLRDLYLHTTCLATLANMAPH
FHHLSAYASQRLVSLFYMLSRKYNKLAERIDDKMGKSGSLGQDSLAEDLSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAIMHRQEVFEPFKNHPR
FSELIENIYMVLDFFNSRIDSQTHDGEWSAEKVLQLIIMNCRSWRVEGMKMFTQLHFSYEQESHPEEFFTPYIWRVALSQRGLSFDPSAINLFPVDLPIE
KPNDDVDDQSKFQNTNLNEHRVLLDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04200 unknown protein Potri.010G081800
[exp]
0 1
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.001G197600
[exp]
1.00 0.8916
AT4G38040 Exostosin family protein (.1) Potri.008G060500
[exp]
2.23 0.7811
AT2G36450 AP2_ERF HRD HARDY, Integrase-type DNA-bind... Potri.016G018600
[exp]
2.82 0.8216
AT1G43890 ATRAB-C1, RAB18... RAB GTPASE HOMOLOG 18-1, ARABI... Potri.002G074400
[exp]
3.46 0.7939
AT5G39890 Protein of unknown function (D... Potri.004G129400
[exp]
5.74 0.7637
AT3G60520 unknown protein Potri.002G142600
[exp]
8.66 0.7328
AT2G02970 GDA1/CD39 nucleoside phosphata... Potri.010G169100
[exp]
11.48 0.7213
AT4G14270 unknown protein Potri.001G023100
[exp]
12.40 0.6881
AT1G22410 Class-II DAHP synthetase famil... Potri.005G162800
[exp]
14.07 0.7809 DHS4
AT1G22060 unknown protein Potri.002G091700
[exp]
15.74 0.7861

Potri.010G081800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.