Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14723 71 / 1e-16 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT3G22820 68 / 1e-15 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT2G30370 56 / 1e-10 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157300 [exp] 77 / 4e-19 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.013G155500 [exp] 57 / 5e-11 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 51 / 8e-09 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041186 [exp] 60 / 2e-12 AT4G14723 106 / 5e-31 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10021901 [exp] 60 / 2e-12 AT4G14723 104 / 2e-30 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10006616 [exp] 59 / 2e-12 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10024189 [exp] 50 / 8e-09 ND 107 / 4e-31
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G082200.2 pacid=42797517 polypeptide=Potri.010G082200.2.p locus=Potri.010G082200 ID=Potri.010G082200.2.v4.1 annot-version=v4.1 ATGTCCCTACTACGCCCCCGTCACCACTTATCAACACTCACTGCCTTTACTTTTCTTGTATTTTTCTCTGCCTCAGCTACAACAGTACTACTCTCCCAGC TAGGCAGTGGATCACTTCAAGAGGGAGGGGAAGATAAGGGAAAAGGAAGTGGGTTAGGGGCATTTCCGCGAGTTCTGACTCAGAAGCGACACGGTGGACC AGGTTCTTCGCCCCCTTCGTGTAGATCCAAGTGCGACAAGTGCTCGCCATGTGAACCAGTTCACGTGCCAATTCAACATGGTTGGCGTATGCCATTAGAG TATTACCCAGAGGCTTGGAGATGGAGCTTTGGGAATGTAAGTTGCTGTAGAGGTGAGGTTACTATACCAAGAGGCCAGGATACCTCTCTGTCTCTCTCTC TCTCTCCTTAA
AA sequence Show only first row Show all	>Potri.010G082200.2 pacid=42797517 polypeptide=Potri.010G082200.2.p locus=Potri.010G082200 ID=Potri.010G082200.2.v4.1 annot-version=v4.1 MSLLRPRHHLSTLTAFTFLVFFSASATTVLLSQLGSGSLQEGGEDKGKGSGLGAFPRVLTQKRHGGPGSSPPSCRSKCDKCSPCEPVHVPIQHGWRMPLE YYPEAWRWSFGNVSCCRGEVTIPRGQDTSLSLSLSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.010G082200 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	5.09	0.8654
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.014G154500 [exp]	6.48	0.8774
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Potri.013G117600 [exp]	8.66	0.8448
AT1G26100			Cytochrome b561/ferric reducta...		Potri.010G131100 [exp]	9.16	0.8444
AT1G23550		SRO2	similar to RCD one 2 (.1)		Potri.006G231500 [exp]	13.30	0.7231
AT4G09970			unknown protein		Potri.013G102300 [exp]	14.31	0.7835
					Potri.001G075201 [exp]	15.87	0.8226
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	16.30	0.8225
AT5G04690			Ankyrin repeat family protein ...		Potri.015G119401 [exp]	17.54	0.8034
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.019G061550 [exp]	18.97	0.8343

Compare expression of checked genes

Potri.010G082200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.