Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCLH1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43860 370 / 9e-129 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1) AT1G19670 223 / 1e-70 CORI1, ATHCOR1, ATCLH1 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214200 [exp] 211 / 2e-65 AT1G19670 237 / 7e-76 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Potri.005G214100 [exp] 49 / 2e-07 AT1G19670 59 / 2e-11 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039372 [exp] 407 / 6e-143 AT5G43860 392 / 2e-137 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1) Lus10004076 [exp] 179 / 3e-53 AT1G19670 234 / 6e-75 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Lus10014702 [exp] 172 / 6e-51 AT1G19670 229 / 4e-73 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G082300.1 pacid=42798088 polypeptide=Potri.010G082300.1.p locus=Potri.010G082300 ID=Potri.010G082300.1.v4.1 annot-version=v4.1 ATGAAAACGTTAGAAAGAACAAGGAAAAGCCTAATTAATACAGTAACCATGTCATCCTCTTCTGCTATAGCAACTGTTACTACTACTGTGTTCGAGGCTG GGAAGTATACAACAGTGCTTCAAAAAGTAGAATCAAGAACTACATGCTGCACCGCAAAGACTTCACCTCCACTTCCTGTTCCACCTCCAAAACCACTCTT GATTGTTATGCCATGTGAAGCAGGGGAATTCCCACTTCTTGTTTTCCTCCATGGTTACCTTCTTTACAATTCTTTCTACTCCCAGCTCCTGCAACATATT GCTTCTCATGGGTTCATTGTCATTGCTCCTCAGTTATATCTTGTGGCTGGACAAGATTCTAGTGATGAAATTAAATCTGTGGCTGCAACCACAAATTGGC TATCCGAAGGACTGCATCACCTACTTCCACCCCATGTTAAACCAAATCTAAGCAAGCTAGGCCTTGCAGGCCATAGTCGAGGTGGCAAGACTGCTTTTGC ATTAGCTCTTGAGAAAGCAGCAGCCACATTAAAATTCTCAGCACTAATTGGTGTGGACCCAGTTGATGGAATGGACAAAGGGAAACAAACCCCTCCACCA GTACTCACATATGTTCCTCATTCGTTTGATCTTGATATGGCAATCATGGTCATTGGTTCTGGCTTGGGTGAGCTGAAGAAGAACCCTCTGTTCCCTCCTT GTGCACCTGAGGGTGTTAATCATAAGGATTTTTTCAAAGAATGTAAAGGGCCGGCTAGTTATTTCGTTGTTAAGGATTATGGACATCTTGATATGCTAGA TGATGATACTGAAGGGATTAGAGGAAAAACTACATATTGTCTGTGCAAGAATGGGAAGTCCAGGGAGCCGATGAGGAAATTTATTGGAGGAGTTGTGGTC GCATTTATGAAAGCATACTTGGGAGGTGATAGCAGTGACTTGATGGCTATAAAGGGTGGGCAGACCGGACCGGTGGAACTTCAAACTGTTGAATATATTC TCTGA
AA sequence Show only first row Show all	>Potri.010G082300.1 pacid=42798088 polypeptide=Potri.010G082300.1.p locus=Potri.010G082300 ID=Potri.010G082300.1.v4.1 annot-version=v4.1 MKTLERTRKSLINTVTMSSSSAIATVTTTVFEAGKYTTVLQKVESRTTCCTAKTSPPLPVPPPKPLLIVMPCEAGEFPLLVFLHGYLLYNSFYSQLLQHI ASHGFIVIAPQLYLVAGQDSSDEIKSVAATTNWLSEGLHHLLPPHVKPNLSKLGLAGHSRGGKTAFALALEKAAATLKFSALIGVDPVDGMDKGKQTPPP VLTYVPHSFDLDMAIMVIGSGLGELKKNPLFPPCAPEGVNHKDFFKECKGPASYFVVKDYGHLDMLDDDTEGIRGKTTYCLCKNGKSREPMRKFIGGVVV AFMKAYLGGDSSDLMAIKGGQTGPVELQTVEYIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Potri.010G082300 [exp]	0	1	ATCLH1.2
AT2G44870			unknown protein		Potri.004G030100 [exp]	2.82	0.9779
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	4.47	0.9692
AT2G27290			Protein of unknown function (D...		Potri.009G161800 [exp]	4.89	0.9661
AT3G04550			unknown protein		Potri.013G044900 [exp]	6.00	0.9707
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.005G038700 [exp]	7.34	0.9713
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Potri.001G074200 [exp]	9.16	0.9703
AT4G38225			unknown protein		Potri.004G207400 [exp]	12.32	0.9661
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059800 [exp]	17.14	0.9661
AT2G38660			Amino acid dehydrogenase famil...		Potri.006G114100 [exp]	19.97	0.9410
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	20.34	0.9646

Compare expression of checked genes

Potri.010G082300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.