Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 261 / 2e-83 IQD19 IQ-domain 19 (.1) AT3G16490 98 / 3e-22 IQD26 IQ-domain 26 (.1) AT4G23060 88 / 1e-18 IQD22 IQ-domain 22 (.1) AT4G29150 85 / 9e-18 IQD25 IQ-domain 25 (.1) AT1G51960 64 / 7e-11 IQD27 IQ-domain 27 (.1) AT3G49260 62 / 4e-10 IQD21 IQ-domain 21 (.1.2.3) AT1G01110 61 / 1e-09 IQD18 IQ-domain 18 (.1.2) AT4G00820 60 / 1e-09 IQD17 IQ-domain 17 (.1) AT5G13460 59 / 2e-09 IQD11 IQ-domain 11 (.1) AT1G17480 56 / 3e-08 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156700 [exp] 643 / 0 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.013G038901 [exp] 144 / 5e-39 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.005G051500 [exp] 135 / 1e-35 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.003G047800 [exp] 107 / 2e-25 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.001G190500 [exp] 97 / 7e-22 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.001G108800 [exp] 96 / 3e-21 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.012G139800 [exp] 95 / 6e-21 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 88 / 1e-18 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.003G122800 [exp] 77 / 7e-15 AT4G23060 109 / 1e-25 IQ-domain 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006613 [exp] 437 / 8e-151 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 380 / 1e-128 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 333 / 4e-110 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10039366 [exp] 172 / 3e-51 AT4G14750 71 / 2e-14 IQ-domain 19 (.1) Lus10039367 [exp] 74 / 7e-16 AT4G14750 59 / 2e-11 IQ-domain 19 (.1) Lus10011131 [exp] 76 / 8e-15 AT3G16490 223 / 2e-68 IQ-domain 26 (.1) Lus10017841 [exp] 72 / 3e-13 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10024498 [exp] 64 / 7e-11 AT4G23060 195 / 4e-58 IQ-domain 22 (.1) Lus10012608 [exp] 61 / 7e-10 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10014870 [exp] 61 / 2e-09 AT2G26180 249 / 5e-74 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.010G082600.1 pacid=42797609 polypeptide=Potri.010G082600.1.p locus=Potri.010G082600 ID=Potri.010G082600.1.v4.1 annot-version=v4.1 ATGGGGAAGCCAGGCAAATGGCTTAGAAGTTTCTTGACAGGGAAGAAAGACAAGGAGAAGGAAAAGGGTACAAGTAATCAGAATTCCACACCTAGTATTG AGAATCCGGTGACTCCAATTTCGATCCCACCAACTACTGCGAAAGAAAAAAGAAGATGGAGTTTTCGCAGATCATCGGCCACAGCAGCTGCTCCCAAGGA CTCGAATTATACAGAACCAACTGCCACCACACAACCAGCTGCAGTGCAGGACACGTTCGATTCAGAGAATGAACAGAAAATGCACGCCATGGCTATCGCA AACAAAGAGGCTAAAGCCATAAAAATTCAATCAGTCTTTCGATCTTATCTGGCAAGAAAAGCATTGCGTGCATTAAAAGGCTTAGTGAAGTTGCAGGCAC TTGTAAGGGGTCACCTGGTGAGGAAACAGGCAACTGCCACTCTCCGGTGCATGCAGGCATTGGTGAATGTACAGACTAGAGCTCGGGCTCAGAGGATCTG GATGAATGAAGACGTAAATCCCAGCCAGAGGCAATCAATCCACAGAAAATCGACTCAGGAGAACAGGATTAGGCACACAAATTATGAGAATGAAAGAGTC ATGGATGAGAACATCAAGATTGTGGAGATGGACGTTGGAGAATCAAAGGGAAGTATAAAGAGCAGAAATAGCTACTCACACCATCCACAAACAGATCGAG CAGAGCACAGATTCTCCACACATTCTGCCCCAAATCATGCATACCCGAAGCAAGAGAACTACCAGGTCTCTCCAGCTCCATCAGCTCTAACAGATATGAG CCCCAGAGCCTCCAGTGGGCATTTTGAGGACTATTCCTTCAGCACAGCACAAAGCAGTCCCCAGTACTACTCTACAGTGTCAAAACCTGATCCATCAACA ATTCCATTTGCCTTTCCAAGGCCAGAGTATGCAGAATCCCTGACCTATGACTACTCATTATTTCCAAATTACATGGCAAACACGGAATCATCCAGGGCCA AAGTTCGGTCACATAGTGCACCGAAACAAAGGCCAGACTCATTTGAGAGGCAACCAAGCCGGAGGAAGGTATCGATAGAGGGAAGGAATGTCCCAAGGGC AGTGCGGATGCAGCGGTCATCTTCTCATGTTGGAGCCACTGCTCAAAACTATCAATATCCATGGTCAATTAAGCTTGACAGATCATCCGTTTCACTTAAA GAGAGTGAGTGCGAATCCAACAGTACGATGCTCACGAACACCAATTACTGCAGATCTCTTGTTGGATTTGAAGTTCATCGAAATAGGTACTAA
AA sequence Show only first row Show all	>Potri.010G082600.1 pacid=42797609 polypeptide=Potri.010G082600.1.p locus=Potri.010G082600 ID=Potri.010G082600.1.v4.1 annot-version=v4.1 MGKPGKWLRSFLTGKKDKEKEKGTSNQNSTPSIENPVTPISIPPTTAKEKRRWSFRRSSATAAAPKDSNYTEPTATTQPAAVQDTFDSENEQKMHAMAIA NKEAKAIKIQSVFRSYLARKALRALKGLVKLQALVRGHLVRKQATATLRCMQALVNVQTRARAQRIWMNEDVNPSQRQSIHRKSTQENRIRHTNYENERV MDENIKIVEMDVGESKGSIKSRNSYSHHPQTDRAEHRFSTHSAPNHAYPKQENYQVSPAPSALTDMSPRASSGHFEDYSFSTAQSSPQYYSTVSKPDPST IPFAFPRPEYAESLTYDYSLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRKVSIEGRNVPRAVRMQRSSSHVGATAQNYQYPWSIKLDRSSVSLK ESECESNSTMLTNTNYCRSLVGFEVHRNRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.010G082600 [exp]	0	1
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.014G118300 [exp]	1.73	0.7969
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248950 [exp]	3.46	0.7686
					Potri.006G103800 [exp]	5.29	0.6953
AT5G20820			SAUR-like auxin-responsive pro...		Potri.006G137000 [exp]	7.00	0.7152	SAUR6
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.017G063500 [exp]	9.79	0.6777
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248975 [exp]	13.56	0.7565
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	16.61	0.6989
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	17.14	0.7578
AT1G55740		RS1, ATSIP1	raffinose synthase 1, seed imb...		Potri.011G166700 [exp]	20.04	0.6487	AGA1.1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	20.44	0.7092

Compare expression of checked genes

Potri.010G082600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.