Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22800 449 / 1e-156 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 426 / 2e-147 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 433 / 9e-147 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 417 / 2e-139 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 393 / 2e-130 LRX2 leucine-rich repeat/extensin 2 (.1) AT4G28380 374 / 2e-128 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 369 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 375 / 1e-124 LRX1 leucine-rich repeat/extensin 1 (.1) AT2G15880 355 / 8e-117 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 353 / 1e-116 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083000 [exp] 464 / 2e-163 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 421 / 4e-143 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 414 / 6e-142 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 398 / 1e-137 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 404 / 1e-134 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 389 / 1e-132 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G245600 [exp] 382 / 2e-129 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 371 / 3e-124 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 363 / 1e-121 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039362 [exp] 470 / 2e-166 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 423 / 2e-147 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 429 / 3e-147 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 408 / 1e-141 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 408 / 2e-137 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 380 / 1e-130 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 383 / 8e-130 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10037905 [exp] 362 / 4e-123 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 317 / 1e-102 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 315 / 3e-102 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G083100.1 pacid=42798990 polypeptide=Potri.010G083100.1.p locus=Potri.010G083100 ID=Potri.010G083100.1.v4.1 annot-version=v4.1 ATGAAGAGCTCATATCTCATCAATCTAACCCTCTGGAGCATCATCAATATCATGCTCTTCCTGTCCAAGGTCAATTCACAAACTTTTTATCCACCTGATT TTCCCATCGTAAGCCCTCAACTCATGGAGGCTTACATAGCTCTCCAGGCTTGGAAACAAGCTATAACCTCTGACCCCAACCATTTTACGGCCAACTGGCA TGGGCCACATGTATGCAACTACACTGGTGTCTATTGTGCCCCAGCCCCATATGACCCTTTTATCTTGACGGTTGCCGGCATAGACCTAAACCACGCCAAC ATAGCCGGTTTTTTGCCTGAAGAGCTTGGGCTCCTTAAAGACCTTGCTCTCTTTCACATAAACTCCAATCGTTTCTTCGGTGTCATCCCTGATAGTTTTA TCCATCTCAAATTTCTTTTCGAGCTTGACATCAGTAACAACCGCTTTAGTGGTCCGTTTCCAAGTGTTGTTTTCTTCTTGCATTCGCTCAAATATCTTGA TGTAAGGTTCAACGAATTCGATGGAAAAATCCCACCACAGCTTTTTGAGCTAAAATTAGATGCTCTTTTCATAAACAATAACAGATTTCACTCAGCCCTG CCTGCTAACCTGGGAAACTCTCCAGTTTCAGTGTTTGTAGCAGCCAACAACGACATCAGAGGCTGCATTCCTCCAAGTTTGGCAAACATGGCAGAGACCC TTGACGAGATTGTTCTCTCTAATATGGCGTTAACAGGTTGTTTACGACAAGATATTGGGCTGCTAAGAGGCTTAACAGTTCTTGATGTCAGCTTCAACAA TTTAGCTGGGCCTTTGCCAGAGTCAGTAGGAGCAATGAGGAACCTGGAGCAGCTAAATGTGGCACATAACAAGTTTTCCGGGCAAGTTCCTAGCAGTATA TGTTCCTTGCCTAAGTTGGAGAATTTCACATACTCGTTTAATTACTTTTCTGGTGAGTCACTGGTGTGCCTCAGGTTGCCGGGGAATGATGATAGGAGGA ATTGTATTCCGAATAGGCCTTTCCAGCGCACACCGGAGGAATGTAGTAACTTTTATGCACATCCCATTAGTTGTGGTTCCATTCAGTGCCTCACTAGCTA G
AA sequence Show only first row Show all	>Potri.010G083100.1 pacid=42798990 polypeptide=Potri.010G083100.1.p locus=Potri.010G083100 ID=Potri.010G083100.1.v4.1 annot-version=v4.1 MKSSYLINLTLWSIINIMLFLSKVNSQTFYPPDFPIVSPQLMEAYIALQAWKQAITSDPNHFTANWHGPHVCNYTGVYCAPAPYDPFILTVAGIDLNHAN IAGFLPEELGLLKDLALFHINSNRFFGVIPDSFIHLKFLFELDISNNRFSGPFPSVVFFLHSLKYLDVRFNEFDGKIPPQLFELKLDALFINNNRFHSAL PANLGNSPVSVFVAANNDIRGCIPPSLANMAETLDEIVLSNMALTGCLRQDIGLLRGLTVLDVSFNNLAGPLPESVGAMRNLEQLNVAHNKFSGQVPSSI CSLPKLENFTYSFNYFSGESLVCLRLPGNDDRRNCIPNRPFQRTPEECSNFYAHPISCGSIQCLTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083100 [exp]	0	1
AT5G39860	bHLH	BNQ1, BHLH136, ...	PACLOBUTRAZOL RESISTANCE1, BA...		Potri.017G081300 [exp]	2.23	0.9948
AT2G18969			unknown protein		Potri.018G090200 [exp]	3.46	0.9946
AT4G08910			unknown protein		Potri.002G231400 [exp]	5.47	0.9939
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	5.91	0.9916
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	6.32	0.9920
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067800 [exp]	6.48	0.9844	ACTI.3
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.010G111200 [exp]	7.21	0.9859
AT5G11420			Protein of unknown function, D...		Potri.006G250100 [exp]	8.48	0.9831
AT4G19430			unknown protein		Potri.003G105900 [exp]	8.77	0.9884
					Potri.012G053400 [exp]	10.72	0.9837

Compare expression of checked genes

Potri.010G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.