Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RS3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04840 407 / 2e-145 Ribosomal protein S3Ae (.1) AT4G34670 406 / 5e-145 Ribosomal protein S3Ae (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156300 [exp] 462 / 3e-167 AT3G04840 414 / 7e-148 Ribosomal protein S3Ae (.1) Potri.005G051200 [exp] 421 / 5e-151 AT4G34670 418 / 1e-149 Ribosomal protein S3Ae (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006609 [exp] 422 / 5e-151 AT4G34670 441 / 1e-158 Ribosomal protein S3Ae (.1) Lus10039360 [exp] 419 / 4e-150 AT4G34670 439 / 6e-158 Ribosomal protein S3Ae (.1) Lus10041191 [exp] 376 / 4e-133 AT4G34670 392 / 2e-139 Ribosomal protein S3Ae (.1) Lus10021907 [exp] 375 / 5e-133 AT4G34670 390 / 7e-139 Ribosomal protein S3Ae (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01015 [poplar] [flax] Ribosomal_S3Ae Ribosomal S3Ae family
Representative CDS sequence Show only first row Show all	>Potri.010G083200.1 pacid=42800185 polypeptide=Potri.010G083200.1.p locus=Potri.010G083200 ID=Potri.010G083200.1.v4.1 annot-version=v4.1 ATGGCCGTCGGGAAGAACAAGAGAATTTCCAAGGGAAAGAAGGGAGGAAAGAAGAAGGCAGCTGATCCATTTTCAAAGAAGGATTGGTATGATATCAAGG CTCCTTCAGTTTTCTCGGTCAAAAACGTCGGCAAGACTCTTGTTACTCGTACTCAGGGTACCAAGATTGCTTCAGAAGGTCTCAAACATCGTGTTTTTGA GATCTCACTTGCAGACCTTCAGGGTGATGAGGATCATGCTTACAGAAAGATCCGTTTGAGAGCTGAAGATGTTCAAGGAAAGAATGTTTTGACAAACTTC TGGGGAATGAATTTTACCAATGACAAGTTGAGGTCTTTGGTGAGGAAATGGCAAACTTTGATTGAAGCTCATGTTGATGTGAAAACCACTGATAACTACA CTTTGAGGATGTTCTGCATCGGGTTCACTAAAAGGCGTCCCAACCAGATCAAGAGGACTACCTATGCTCAGTCCAGCCAAATAAGACAAATACGTCGCAA AATGAGGGAAATTATGACAGCCCAAGCAACTTCTTGTGATCTCAAGGAATTGGTCCGCAAGTTCATTCCAGAGAGCATTGGCAAGGAAATTGAAAAGGCA ACTTCAAGCATCTACCCTCTTCAAAACGTTTTCATCAGGAAAGTGAAGATCTTAAAGGCCCCAAAGTTTGACCTTGGAAAATTGATGGAGGTTCATGGGG ACTATTCCGAGGATGTTGGTGTGAAATTGGAAAGGCCAGCTGATGAGCCAATCGCCGAGGCCCCTGCTGAAACTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.010G083200.1 pacid=42800185 polypeptide=Potri.010G083200.1.p locus=Potri.010G083200 ID=Potri.010G083200.1.v4.1 annot-version=v4.1 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFSVKNVGKTLVTRTQGTKIASEGLKHRVFEISLADLQGDEDHAYRKIRLRAEDVQGKNVLTNF WGMNFTNDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQIKRTTYAQSSQIRQIRRKMREIMTAQATSCDLKELVRKFIPESIGKEIEKA TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKLERPADEPIAEAPAETAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.010G083200 [exp]	0	1	RS3.1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.004G113800 [exp]	1.00	0.9425	RPL7.5
AT5G35530			Ribosomal protein S3 family pr...		Potri.018G049100 [exp]	2.44	0.9304
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.012G139400 [exp]	4.69	0.9392
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	7.00	0.9277
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	7.14	0.9382	Pt-RPS2.3
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.018G140300 [exp]	7.93	0.9258
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.001G153000 [exp]	8.48	0.9007
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.012G114000 [exp]	9.16	0.9380
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G034800 [exp]	12.64	0.9357
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.015G041600 [exp]	13.78	0.9244	Pt-GBF1.2

Compare expression of checked genes

Potri.010G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.