Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22750 601 / 0 Protein kinase superfamily protein (.1) AT4G14780 572 / 0 Protein kinase superfamily protein (.1) AT3G01490 531 / 0 Protein kinase superfamily protein (.1) AT5G50000 521 / 0 Protein kinase superfamily protein (.1) AT3G63260 514 / 0 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 238 / 1e-74 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 231 / 5e-72 Protein kinase superfamily protein (.1) AT1G62400 216 / 3e-67 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 219 / 2e-66 Protein kinase superfamily protein (.1) AT2G17700 218 / 1e-65 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156000 [exp] 742 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 623 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 616 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 537 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 531 / 0 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 529 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 521 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 243 / 1e-76 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 243 / 1e-76 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039357 [exp] 632 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 621 / 0 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 615 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 556 / 0 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 525 / 0 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 524 / 0 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 501 / 2e-177 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 258 / 9e-83 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 233 / 2e-73 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 232 / 3e-72 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G083500.1 pacid=42799614 polypeptide=Potri.010G083500.1.p locus=Potri.010G083500 ID=Potri.010G083500.1.v4.1 annot-version=v4.1 ATGATGGATTCAAAAACAAGTGGTAATGCTGGAGATGTCATGGTTGCGAAGAAACCGGATAACCAAGAAGGTGGTGCCAATTCAAATGTGAAAGGTATAG GAGGTGCGAGTAGCAAAGATATGTATTTTCGAGCTGATAAAATCGATCTTAAAAGCTTGGATGCACAGCTTGAGAAGCACCTGAGCAGGGTATGGTCAAG GGACATTGAAATCCAAAGGCCTAGAGAAGAGTGGGAAATTGATTTGTCTAAATTGGATATAAGGCATGAGGTAGCCCATGGGACTTTCGGGACCGTGTAT CGTGGTACTTATGATAACCAAGTTGTTGCTGTGAAACTGCTGGACTGGGGGGAGGATGGTATGGCCACAGCTGCTGAGACCATGGCTGTCCGGGCATCAT TTCAGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAACGTTACAAAATTTGTTGGAGCATCAATGGGAACTCTCAACCTCAAGATTCCTGCCAA AAACCCATCTGATGATAACATCAATCTCCCTGCTAGGGCATGCTGTGTTGTTGTTGAGTATCTCCCTGGCGGTACACTAAAACAATACTTGATAAGAAAT AGTCGAAAGAAACTTGCTTTTAAGGTTGTAATCCAACTTGCTTTGGATCTCTCTAGAGGTCTTAGCTATCTACATTCAAAGAAGATTGTACATCGTGATG TCAAGACTGAAAACATGTTACTAGATTCTCATAAAACTCTTAAAATTGCTGATTTTGGTGTTGCCCGTATTGAAGCTCAGAATCCATGTGAAATGACCGG AGAAACTGGCACCCTTGGATACATGGCCCCTGAGGTTCTTGATGGCAAACCATATAACAGAAGATGTGATGTCTACAGCTTTGGCATTTGCTTATGGGAA ATTTATTGTTGTGACATGCCTTACCCTGATCTTAGCTTCGCTGATGTCTCATCTGCTGTTGTTCGACAGAATTTGCGTCCAGATATTCCAAGATGCTGTC CAAGTTCTTTAGCAAATGTCATGAGAAAATGCTGGGATGGAAATGCGGAAAAACGTCCTGAAATGGATGAGGTGGTGAAAATGTTGGAAGGGATTGATAC AAGCAAGGGAGGAGGGATGATACCTGAAGATCAGAATTCCGGCTGTTTCTGTTTCAACCCTGTTCGCGGTCCCTAA
AA sequence Show only first row Show all	>Potri.010G083500.1 pacid=42799614 polypeptide=Potri.010G083500.1.p locus=Potri.010G083500 ID=Potri.010G083500.1.v4.1 annot-version=v4.1 MMDSKTSGNAGDVMVAKKPDNQEGGANSNVKGIGGASSKDMYFRADKIDLKSLDAQLEKHLSRVWSRDIEIQRPREEWEIDLSKLDIRHEVAHGTFGTVY RGTYDNQVVAVKLLDWGEDGMATAAETMAVRASFQQEVAVWHKLDHPNVTKFVGASMGTLNLKIPAKNPSDDNINLPARACCVVVEYLPGGTLKQYLIRN SRKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDVKTENMLLDSHKTLKIADFGVARIEAQNPCEMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWE IYCCDMPYPDLSFADVSSAVVRQNLRPDIPRCCPSSLANVMRKCWDGNAEKRPEMDEVVKMLEGIDTSKGGGMIPEDQNSGCFCFNPVRGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22750			Protein kinase superfamily pro...		Potri.010G083500 [exp]	0	1
AT3G23090			TPX2 (targeting protein for Xk...		Potri.008G162800 [exp]	10.63	0.7938
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	11.48	0.7733
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.006G144500 [exp]	13.22	0.7172
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Potri.006G091300 [exp]	16.06	0.7886
AT1G16290			unknown protein		Potri.008G084100 [exp]	17.74	0.7749
AT5G51830			pfkB-like carbohydrate kinase ...		Potri.015G134900 [exp]	22.24	0.6925
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	29.59	0.7586
AT1G59650		CW14	Protein of unknown function (D...		Potri.010G040100 [exp]	35.35	0.7304	CW14.3
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.016G115300 [exp]	36.49	0.7484
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	36.56	0.7567

Compare expression of checked genes

Potri.010G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.