Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22690 1050 / 0 unknown protein AT1G11290 547 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 534 / 3e-179 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 529 / 2e-176 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 523 / 3e-173 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 521 / 8e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 514 / 5e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 507 / 1e-168 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 501 / 7e-166 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 487 / 9e-162 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245300 [exp] 617 / 0 AT3G22690 570 / 0.0 unknown protein Potri.003G031600 [exp] 584 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 582 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 578 / 0 AT3G22690 582 / 0.0 unknown protein Potri.009G044700 [exp] 566 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 550 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 535 / 5e-180 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 531 / 7e-179 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 535 / 4e-178 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039355 [exp] 783 / 0 AT3G22690 627 / 0.0 unknown protein Lus10017446 [exp] 538 / 7e-180 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 528 / 1e-176 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 528 / 6e-176 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 524 / 2e-175 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 526 / 2e-173 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 515 / 1e-172 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 523 / 3e-172 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 508 / 6e-171 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 511 / 3e-170 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.010G083700.1 pacid=42799549 polypeptide=Potri.010G083700.1.p locus=Potri.010G083700 ID=Potri.010G083700.1.v4.1 annot-version=v4.1 ATGGCTGCAACACTTCATCTCTCTACTCTAATTCCTGCTACCCCAACCTCCGTAGCTCTACCCAACCAAAATGAACTAAAAATTTTGACCAAGCACCGCT CTTCTCCAACTGGGTCTTTCAAAAAATGCAAAACGATGACAGAACTCAAACAACTACACTCTCAAATCACTAAAAACGGCCTAAATCACCACCCTTTATC TCTAACCAACCTTATATCCTCTTGCACTGAAATGGGCACTTTTGAAAGTTTAGAATACGCGCAAAAGGCATTAGAGCTCTTCATAGAAGATAATGGAATA ATGGGTACTCATTATATGTTTAGTTCTTTGATTAGAGGTTTCTCTGCATGTGGACTTGGTTATAAAGCCATTGTAGTCTTTCGTCAACTGATGTGCATGG GTGCTGTCCCTGATAATTTCACATTTCCCTTCGTGCTAAGCGCGTGCACGAAGAGTGCTGCGCTTACTGAGGGGTTTCAAGTCCATGGAGCAATCGTTAA AATGGGTTTTGAGAGAGATATGTTTGTAGAGAATTCTTTGATACATTTCTATGGCGAGTGTGGAGAGATTGATTGTATGAGAAGGGTGTTTGATAAAATG TCTGAGAGAAATGTTGTGTCATGGACTAGCTTGATTGGTGGCTATGCTAAGAGGGGCTGTTATAAAGAGGCTGTTTCTTTGTTTTTTGAGATGGTAGAGG TGGGTATTAGACCCAATTCAGTTACGATGGTAGGAGTGATTTCAGCTTGTGCAAAGTTGCAGGATCTCCAGTTGGGAGAGCAGGTGTGTACTTGTATTGG TGAGTTAGAGTTGGAGGTTAATGCACTGATGGTTAATGCACTTGTTGACATGTACATGAAATGTGGAGCTATAGATAAGGCAAGAAAGATTTTTGACGAG TGTGTTGATAAAAATTTGGTCTTGTACAACACAATCATGTCAAATTATGTGCGCCAAGGGCTGGCAAGAGAAGTTCTTGCTGTATTGGGTGAAATGTTGA AACACGGTCCACGACCTGATAGGATTACAATGTTGTCTGCAGTCTCAGCATGTTCAGAGTTGGATGATGTTTCTTGTGGAAAATGGTGCCATGGTTATGT TTTGAGGAATGGATTAGAAGGTTGGGACAATGTTTGCAATGCCATCATTAACATGTACATGAAGTGTGGCAAACAAGAAATGGCTTGTAGAGTCTTTGAT CGCATGTTGAACAAGACTCGGGTGTCATGGAACTCACTGATTGCAGGTTTTGTTAGAAATGGTGACATGGAGTCCGCTTGGAAAATTTTCAGTGCGATGC CAGACAGTGATCTTGTCTCTTGGAACACAATGATCGGGGCTTTGGTACAAGAGAGCATGTTCAAGGAAGCGATAGAACTTTTTCGGGTAATGCAGAGCGA GGGAATAACGGCAGACAAGGTGACAATGGTGGGTGTTGCATCGGCCTGTGGGTATCTAGGAGCTCTGGACCTTGCAAAGTGGATCCATGGTTATATTAAG AAGAAAGATATTCACTTTGATATGCACCTTGGCACAGCCTTGGTTGATATGTTTGCTAGATGTGGTGACCCTCAGAGTGCAATGCAAGTTTTCAACAAGA TGGTGAAAAGAGATGTTTCAGCCTGGACTGCTGCCATTGGTGCAATGGCCATGGAGGGAAATGGAACTGGGGCTATTGAGCTTTTTGATGAGATGCTGCA GCAAGGGATCAAACCAGATGGAGTGGTTTTTGTGGCACTCCTGACTGCATTGAGCCATGGTGGGTTGGTAGAACAGGGTTGGCATATTTTCAGGTCCATG AAGGATATCTATGGCATAGCTCCCCAAGCTGTCCATTATGGGTGCATGGTTGATTTGCTTGGCCGAGCTGGGTTACTGAGCGAAGCTCTTAGTCTCATAA ATAGTATGCAAATGGAGCCTAATGATGTGATCTGGGGATCGCTTTTAGCTGCTTGCCGGGTGCACAAAAATGTAGACATCGCAGCTTATGCAGCTGAAAG GATAAGCGAATTGGATCCTGAGAGGACTGGGATTCATGTGCTTCTGTCAAACATATATGCCTCTGCAGGAAGATGGGATGATGTTGCAAAGGTTAGGCTA CACCTAAAGGAGAAAGGAGCCCATAAAATGCCTGGATCAAGCTCAATCGAGATCAATGGCAAAATTTTTGAGTTCACGACTGGTGATGAATCACACCCAG AAATGACCCACATTGAACCTATGTTGAAAGAGATTTGCTGTAGGCTAAGAGACATTGGCTATGTTCCTGATCTTACGAATGTTCTGCTTGATGTTAATGA GAAGGAAAAGGAGTACCTGCTCAGTCGACACAGTGAAAAATTGGCAATAGCTTTTGCACTTATCAGTACAGGTCAAGGAATGCCAATTCGTGTTGCAAAG AATCTCCGAATATGCTCTGATTGCCACTCATTTGCCAAACTAGTATCAAAATCATACAGCCGAGAAATCATTGTTCGGGATAACAACCGTTTCCACTTTT TCCAGCAAGGTTTCTGTTCTTGTGGTGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.010G083700.1 pacid=42799549 polypeptide=Potri.010G083700.1.p locus=Potri.010G083700 ID=Potri.010G083700.1.v4.1 annot-version=v4.1 MAATLHLSTLIPATPTSVALPNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGI MGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKM SERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDE CVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFD RMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIK KKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSM KDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRL HLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAK NLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22690			unknown protein		Potri.010G083700 [exp]	0	1
AT1G34160			Tetratricopeptide repeat (TPR)...		Potri.005G199800 [exp]	1.41	0.9243
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.001G020501 [exp]	6.48	0.8832
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	6.63	0.9122
AT5G21970			Ubiquitin carboxyl-terminal hy...		Potri.006G218100 [exp]	6.92	0.8917
AT1G50910			unknown protein		Potri.011G136400 [exp]	7.48	0.8783
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	11.35	0.9010
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	14.38	0.8754
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	16.73	0.8655
AT3G23710		AtTic22-III	translocon at the inner envelo...		Potri.002G236000 [exp]	20.73	0.8753
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Potri.017G091700 [exp]	23.87	0.8332

Compare expression of checked genes

Potri.010G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.