Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22670 487 / 1e-167 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04130 294 / 4e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G71060 221 / 2e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 218 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 209 / 1e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 200 / 2e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 187 / 2e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 186 / 6e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 179 / 5e-50 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 175 / 3e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083900 [exp] 663 / 0 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083800 [exp] 644 / 0 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G055500 [exp] 322 / 1e-103 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G114700 [exp] 228 / 1e-67 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 220 / 3e-65 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 211 / 2e-60 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 196 / 8e-56 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 196 / 2e-55 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 190 / 6e-54 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041193 [exp] 639 / 0 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015827 [exp] 270 / 6e-84 AT3G04130 535 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036975 [exp] 249 / 3e-77 AT3G04130 473 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001588 [exp] 219 / 2e-63 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 215 / 9e-63 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 197 / 2e-55 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 189 / 5e-53 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042307 [exp] 188 / 5e-53 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 190 / 1e-52 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 179 / 4e-49 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.010G084000.1 pacid=42799631 polypeptide=Potri.010G084000.1.p locus=Potri.010G084000 ID=Potri.010G084000.1.v4.1 annot-version=v4.1 ATGGCAGTAAACCTCCAAATTCCCAGGCTCTTTCAAAAGTCCCTCTCTCCAAAACCTTACCAAATCAATCACTTATTACTCAAATATCTATGCACCACAC CCGATTTTCCCCTCACTACTCATGACACATCCAACTCGCCTGAGTCTCCTGATCTCCCAACTTGGCTCTCCAACAGCCAAAACCAAAAACCCTCTGACCC GGATGATGGAGATTTTGTTATCCCTTCGCTTGCCAGCTGGGTCGAGAATCCCAACCTTGAAACGCACAGAAACGTGCCCAGTCCCTTGCTATTCGAACCA CAAGTTAGCAATGCCGATAAATTGAGTGAAATCCTTAAAAAACGCTACTCATCTGAAGCTGCTGTTGTGAAGGCGTTGAATGAGAGTGGTATTGATGCCA CAAATGAGTTGGTTTCACAGATTTTGATGAGATTTGACAGCCATTGTGTCGTGGCTTTTGGGGTTTTCATTTGGGCAAAAAATCAAACAAGTTATGTGCA TACACCTGAGTTATATGATTACATGATTGATATATTAGGAAAGTTCAAGAAGTTTAGTCTTATGTGGAATTTAGTTGAGCAAATGAAAGGGTTAAATGGG TACGTTTCATTGGCGACAGCGAGCAAGGTAATGAGGCGGCTCGCTAAAGCTCGCAAGTATAAAGATGCTATCGATGTATTTAGAGGAATTGAGAAATATG GTGCTAGCAAAGACAGAGAGGCATTGAATGTCCTAATGGATGCATTGGTGAAGGAGGGCGATGTTGAGGATGCTCATAGTGCGTTTTTAGAGTTTAAGGA TTGTATAACTCTGGATTCTAGTAGTTTCAATATCTTGATACATGGGTATTGCAAAGCACGGATGTTTGTTGTTGCAAGAAAGATAATGGAAGAAATGGAG AAACACGGGTTTCACCCTGACGTTGTTTCATACTCTTGTTTCATAGCAGCATATTGTGAACAGAAGGATTTTAGAAATGTAGAAGCTGTTTTTGATGAGA TGCAAGAAAAGGGTTGCAAGCCTAATGTCATTACATATACTACTGTTATGCATGCTTTAGGGAAAGCAAGGCAACTAAATGAAGCTTTGGAGGTTTATGA AAAAATGAAAAGAAATGGTTGTCTGCCAGATTCTAAATTTTATAGCTCCTTAATATATGTATTAAGTCAGTCTGGAAGGATAAAAGATGCTTGGGATGTA TTTGAGGACATGGAAAAGCAAGGTGTTTGTCGGAATTTGTGGGTATATAATACCATGATTTCTTCTGCTTGTGCACATTCTCAAGGAGGGAGTGCTTTAA AGTTGCTTGAAAGAATGGAAGGGGATTCTTGCAAGCCAGATGTCAAGACTTACGCACCTTTATTGAAGATGTGTTGCAGGAGGAAATCTATTAAGCTGCT CAAGTTTCTTTTGAGTCACATGTTCAAGAACAATGTCAGTGTTGATCTTGGTACATATACTCTTTTGGTGAATGAATTTTGTAGGAATGGGAAACTTGAA CATGCTTGCTTCTACTTTCAAGAAGCTGTGTTGAAGGGAATGGTTCCTATGGTTAAGACATTCAAGGCGCTGGTGGAGGAGCTTGAACAAAAGAATATGA AAGAAATGAAGGAAAAGATTGAGAAGTTGATGTTTCAGGCGAGAGAGCGAAATTTGACTTAG
AA sequence Show only first row Show all	>Potri.010G084000.1 pacid=42799631 polypeptide=Potri.010G084000.1.p locus=Potri.010G084000 ID=Potri.010G084000.1.v4.1 annot-version=v4.1 MAVNLQIPRLFQKSLSPKPYQINHLLLKYLCTTPDFPLTTHDTSNSPESPDLPTWLSNSQNQKPSDPDDGDFVIPSLASWVENPNLETHRNVPSPLLFEP QVSNADKLSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKNQTSYVHTPELYDYMIDILGKFKKFSLMWNLVEQMKGLNG YVSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHGYCKARMFVVARKIMEEME KHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDV FEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLE HACFYFQEAVLKGMVPMVKTFKALVEELEQKNMKEMKEKIEKLMFQARERNLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G084000 [exp]	0	1
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	3.16	0.9503
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	3.87	0.9491	CRR2.1
AT5G13830			FtsJ-like methyltransferase fa...		Potri.010G202200 [exp]	4.47	0.9393
AT5G17460			unknown protein		Potri.004G091600 [exp]	5.09	0.9227
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	5.47	0.9462
AT1G08845			Ribosomal L18p/L5e family prot...		Potri.013G029300 [exp]	6.00	0.9170
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	6.24	0.9331
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	7.48	0.9436
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	8.06	0.9466
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	8.24	0.9191

Compare expression of checked genes

Potri.010G084000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.