Plant FIBer expression Database

Potri.010G084600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G084600.1 pacid=42798089 polypeptide=Potri.010G084600.1.p locus=Potri.010G084600 ID=Potri.010G084600.1.v4.1 annot-version=v4.1
ATGGTCAAGGTCGTCGCTGTCCGCCATTTGCTTTTGCTTGTCCTTGTATTCGTCTCAGGTACAACCAATATGTCGTCTGTTAAGGCCGGAGATTGCCGGG
GTGGATATCTATCCACGATCGGAGGTGGTTGTCCAGACAAACAACAGTGCTTGGAAATATGCAGGCCATGTTACCGAGGTTATGGAATTGTCGAAGCCTA
CTGCGTTGGTCCAGGCGGTCCGTTCCCATACTGGGAATGTCGCTGTGCATTCCACAAAGGTGCACCCTGCCCACCACCAGGTCCTCCGCAATGTCCTGGA
AGGTGGCCGCCTCCCCTGACCAATTCAACCACCCTCAATGGAACTCTTGTGTAA
AA sequence
>Potri.010G084600.1 pacid=42798089 polypeptide=Potri.010G084600.1.p locus=Potri.010G084600 ID=Potri.010G084600.1.v4.1 annot-version=v4.1
MVKVVAVRHLLLLVLVFVSGTTNMSSVKAGDCRGGYLSTIGGGCPDKQQCLEICRPCYRGYGIVEAYCVGPGGPFPYWECRCAFHKGAPCPPPGPPQCPG
RWPPPLTNSTTLNGTLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G084600
[exp]
0 1
AT5G48670 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) Potri.013G001700
[exp]
2.82 0.7132
AT3G13850 AS2 LBD22 LOB domain-containing protein ... Potri.001G196400
[exp]
11.66 0.6319 Pt-LBD22.1
AT4G33010 ATGLDP1 glycine decarboxylase P-protei... Potri.018G053720
[exp]
14.56 0.7248
AT1G49330 hydroxyproline-rich glycoprote... Potri.009G113900
[exp]
18.08 0.6904
AT4G14965 ATMAPR4 membrane-associated progestero... Potri.006G023801
[exp]
23.66 0.6044
AT5G47530 Auxin-responsive family protei... Potri.019G096600
[exp]
26.85 0.6571
AT5G55690 MADS MADS-box transcription factor ... Potri.001G214900
[exp]
28.61 0.5665
AT5G28470 Major facilitator superfamily ... Potri.006G091600
[exp]
31.17 0.5917
AT3G44680 HDA09, HDA9 histone deacetylase 9 (.1) Potri.011G156250
[exp]
36.66 0.5638
AT1G23880 NHL domain-containing protein ... Potri.008G122450
[exp]
55.99 0.5260

Potri.010G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.