Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 307 / 5e-100 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 214 / 9e-64 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22400 208 / 1e-61 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 206 / 7e-61 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT2G36970 203 / 1e-59 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 201 / 5e-59 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 197 / 1e-57 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT3G22250 195 / 5e-57 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 193 / 5e-56 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT4G01070 181 / 2e-51 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022800 [exp] 442 / 1e-152 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 394 / 8e-134 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 389 / 6e-132 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 360 / 7e-121 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G019400 [exp] 231 / 1e-70 AT3G22250 494 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022500 [exp] 206 / 5e-61 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G313000 [exp] 206 / 1e-60 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022300 [exp] 204 / 4e-60 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 204 / 5e-60 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040533 [exp] 405 / 8e-139 AT3G02100 256 / 1e-80 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 329 / 2e-108 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 326 / 5e-107 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 323 / 6e-106 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 320 / 5e-105 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 319 / 3e-104 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 318 / 4e-104 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 315 / 7e-103 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10021163 [exp] 308 / 2e-101 AT3G02100 192 / 7e-57 UDP-Glycosyltransferase superfamily protein (.1) Lus10034699 [exp] 310 / 1e-100 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.010G084900.1 pacid=42798400 polypeptide=Potri.010G084900.1.p locus=Potri.010G084900 ID=Potri.010G084900.1.v4.1 annot-version=v4.1 ATGGAACACACCTCCATTTCCACTAGTCCTCATCAAGCCAACGCCCATGTTCTACTGTTGCCATTACCTCTTCAAGGACACGTTGCACCATTTATGAAAC TAGGACACCAGCTTGTTAGACATGGAAGCAAGGTCACATTCTTAACTACAGAGTCCATACGTTCGCAAATAGAGAAGGTTGACGAGGAGGAGGAACATAT GAGGATTATTTCTGTTCCTGATGGATTAGCACTAGAAGATGACCACAAAGATGATAATCGACTAGTCCAGAGCTTCTTACACGTCATTCCTGGTCACTTG GAGAACTTGATTAGGAAGACCAATGAAGATGAGCTGATTGGCATTGGCCAGATTACTTGTCTCATAGTTGACGTGGTTCTAAGTCGGGATCCTATAGAGA TTGCAGAGAAGATGGGGCTAAAACATGCCATCTTTTTCCCTTCAGCACCAGGAGTACTGGCACTGATACTTCACATTCCAAAGCTTATTGAGGCTGGCAT TATAGATGCTGATGATGGTACTGTGGAGAAGAATGAGAAGATACAACTATCACCAAATTTACCAGCCATGGATAGTGCTGATTTTATTTGGAAGAGACCA GGAAACAAGTCCAACTTCAACCAAAAGGATGTGTTTCAGTACCTACTTCTTGTTAATCAAATTCTGAAGGTTCCCAACTGGGTTCTATGTAACTGGTTCC ACGAGCTTGACCCTTCAGCAAATGCCTTGCTTCCGAACATAATCTCTGTTGGTCCATTGCCTGCCCATGATGGGAAATCTACTGGAAACTTTCGGTCAGG GGACTTGACTTGCTTACCTTGGCTTGACAGACAGTCTCCTGGATCGGTCATTTATATCGCCTTTGGTAGCACATCAAAGTTCAGTCAACAGCAATTTCAT GAGCTAGCATTTGGCCTTGAACTCATCGGTAAACCATTTCTATGGGCTGTTCGTTCAGACTTCATCGATGGGATTTCTATTGAATATCCCGATGGTTTCC AAGATAGAGTAAAAAATCTTGGAAAGATAGTCAACTGGGCACCGCAAGAAAAGGTGTTGGCTCACCCTTCCATTGCCTGTTACATGACTCATTGTGGTTG GAACTCAACTATGGAGAGCATAAACATGGGGATTCCCATGCTATGTTGGCCGTACTTTGGAGATCAGTTTTGGAACAAGAGTTGTGTATGTTATGGTTGG AAGGTTGGCTTGGAAATAGACCCTGACGAGAGTGGGATGGTCACGAGGCATGAAATCAAGAGGAAGGTGGACGAATTGCTGTCTGATGAAGGCATAAAAG CAAATGCTCTCAAGTTGAAGGAACTGGCTCTAAACAATGCCTATGAAGGGGGATCTTCAAAAAATTTCAGAGACTTTGTTGCACAGCTGATGCTTTAA
AA sequence Show only first row Show all	>Potri.010G084900.1 pacid=42798400 polypeptide=Potri.010G084900.1.p locus=Potri.010G084900 ID=Potri.010G084900.1.v4.1 annot-version=v4.1 MEHTSISTSPHQANAHVLLLPLPLQGHVAPFMKLGHQLVRHGSKVTFLTTESIRSQIEKVDEEEEHMRIISVPDGLALEDDHKDDNRLVQSFLHVIPGHL ENLIRKTNEDELIGIGQITCLIVDVVLSRDPIEIAEKMGLKHAIFFPSAPGVLALILHIPKLIEAGIIDADDGTVEKNEKIQLSPNLPAMDSADFIWKRP GNKSNFNQKDVFQYLLLVNQILKVPNWVLCNWFHELDPSANALLPNIISVGPLPAHDGKSTGNFRSGDLTCLPWLDRQSPGSVIYIAFGSTSKFSQQQFH ELAFGLELIGKPFLWAVRSDFIDGISIEYPDGFQDRVKNLGKIVNWAPQEKVLAHPSIACYMTHCGWNSTMESINMGIPMLCWPYFGDQFWNKSCVCYGW KVGLEIDPDESGMVTRHEIKRKVDELLSDEGIKANALKLKELALNNAYEGGSSKNFRDFVAQLML

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02100			UDP-Glycosyltransferase superf...		Potri.010G084900 [exp]	0	1
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	3.16	0.9710
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.006G005000 [exp]	3.87	0.9710
AT4G33550			Bifunctional inhibitor/lipid-t...		Potri.009G048800 [exp]	7.34	0.8545
AT5G13620			unknown protein		Potri.008G045000 [exp]	8.00	0.8649
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259000 [exp]	8.48	0.8052
AT1G43730			RNA-directed DNA polymerase (r...		Potri.004G000150 [exp]	10.24	0.7904
					Potri.007G009000 [exp]	10.81	0.8012
AT3G30387			Protein of unknown function (D...		Potri.017G039125 [exp]	12.64	0.7044
AT1G79010			Alpha-helical ferredoxin (.1)		Potri.004G154900 [exp]	13.19	0.6374
AT4G12650			Endomembrane protein 70 protei...		Potri.015G063002 [exp]	14.14	0.6592

Compare expression of checked genes

Potri.010G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.