Plant FIBer expression Database

PAFE901 (Potri.010G085500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PAFE901
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22590 556 / 0 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G155000
[exp]
476 / 5e-170 AT3G22590 385 / 3e-134 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041198
[exp]
560 / 0 AT3G22590 547 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Lus10010571
[exp]
547 / 0 AT3G22590 526 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Lus10021913
[exp]
526 / 0 AT3G22590 516 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Lus10039347
[exp]
296 / 9e-101 AT3G22590 295 / 2e-100 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Lus10026680
[exp]
83 / 4e-18 AT3G22590 63 / 1e-11 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF05179 CDC73_C RNA pol II accessory factor, Cdc73 family, C-terminal
CL0023 PF16050 CDC73_N Paf1 complex subunit CDC73 N-terminal
Representative CDS sequence
>Potri.010G085500.4 pacid=42799617 polypeptide=Potri.010G085500.4.p locus=Potri.010G085500 ID=Potri.010G085500.4.v4.1 annot-version=v4.1
ATGGATCCACTCTCAGCACTCCGCGACTTCACCATCCGGGGTGACCTAGACAAAATAATCCGCATCAACGACGAATTCCGCTTCGGCAACGAATACACCT
TCCCTTGCTCAACTAAAACCGCTTACCGCTCCAAACAAGGCAATCTCTACACACTAGAAACCCTAGTTTACTGCATCCAAAACACCAAAATCAAGTTCAC
CAATTACCTCCAAGACGCCCTCGCTCTCGGCATCCCCCCTGTCACTTACATCGACTGGAAACCCGTCAAAGAATACCTCTCCGGAAAACTCTCTTCTACC
GACTCCATAGTTTTCCCTCTTCCTCAAGAATCTCAAAACCCTAATCTTAATTACCGCCCCGATGATCCTATGCTTCTTGATTCTCGAATCGATGATTCCG
CCGCCGCCGACAAGGTGAACAATGGGAATGAGGGAGTTGAAAATCACGTTTCTTTGATTTACGCCAACGAGAGGCCGTTGAAGGATAGGGAGTCGTTGTT
GGAGTGTAAGAATAGGGATTTTTATGGGGTTTTGGTTGCTTCCACGCGCCGTGAAGAGGAGAGGCATAAATTTGAGAGTCAACAGAGGAAAGATGGGTTA
GTGGCGAAGAGTAGGTTGATGGGAACTGATGAGAGAGGAATTGGGTATGGTGGTGATGAGTTGGGCTATGATTCAGCGGCCAAGCCCAAAATGCATTCGA
AAGGAGGGAAAATTGGGGAGGGGGTGCCCATAATTTTGGTGCCAAGTGCGTTTCAGACTTTGATTACGATTTATAATGTGAAGGAATTTTTGGAAGATGG
GATTTTCATACCGACGGATGTGAAGGCTAAGCAGATGAAAGGGCCGAAACCGGAATGTGTTACAGTGCAGAAGAAGTTTAGCACTGATAGGAATAGAGTG
ATGACGGCTTATGAGGTGCGGGATAAGCCGTCTGCACTCAAGGGTGATGACTGGGATAGGGTTGTGGCAGTTTTTGTGCTGGGGAAGGAGTGGCAATTCA
AGGATTGGCCCTTTAAGGATCATGTTGAGATATTTAATAAAATTATTGGATTTTTCATGCGGTTTGAAGATGATAGTGTGGAGTCTGCTAAGATTGTGAA
GCAGTGGAATGTAAAGATTATCTCGATCAGCAAGAACAAGAGGCACCAGGATAGGGCTGCAGCGTTGGAGGTGTGGGACCGACTAGAAGAATTTGTGCGC
TCACAATCACACACTTGA
AA sequence
>Potri.010G085500.4 pacid=42799617 polypeptide=Potri.010G085500.4.p locus=Potri.010G085500 ID=Potri.010G085500.4.v4.1 annot-version=v4.1
MDPLSALRDFTIRGDLDKIIRINDEFRFGNEYTFPCSTKTAYRSKQGNLYTLETLVYCIQNTKIKFTNYLQDALALGIPPVTYIDWKPVKEYLSGKLSST
DSIVFPLPQESQNPNLNYRPDDPMLLDSRIDDSAAADKVNNGNEGVENHVSLIYANERPLKDRESLLECKNRDFYGVLVASTRREEERHKFESQQRKDGL
VAKSRLMGTDERGIGYGGDELGYDSAAKPKMHSKGGKIGEGVPIILVPSAFQTLITIYNVKEFLEDGIFIPTDVKAKQMKGPKPECVTVQKKFSTDRNRV
MTAYEVRDKPSALKGDDWDRVVAVFVLGKEWQFKDWPFKDHVEIFNKIIGFFMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLEEFVR
SQSHT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G22590 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROM... Potri.010G085500
[exp]
0 1 PAFE901
Potri.011G073291
[exp]
4.79 0.8818
Potri.019G025866
[exp]
9.16 0.8755
AT5G51300 splicing factor-related (.1.2.... Potri.001G126400
[exp]
12.16 0.8721
Potri.012G009345
[exp]
12.44 0.8678
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.003G063000
[exp]
12.68 0.8239
AT3G62200 Putative endonuclease or glyco... Potri.013G003200
[exp]
15.42 0.7642
AT1G02420 Pentatricopeptide repeat (PPR)... Potri.007G079400
[exp]
16.43 0.8300
AT1G75200 flavodoxin family protein / ra... Potri.002G260700
[exp]
17.94 0.8375
AT3G55560 AT-hook AHL15, AGF2 AT-hook motif nuclear-localize... Potri.008G058700
[exp]
19.18 0.8333
AT4G15880 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cystein... Potri.010G013700
[exp]
19.44 0.7951

Potri.010G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.