Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32040 651 / 0 Major facilitator superfamily protein (.1) AT1G79710 171 / 9e-47 Major facilitator superfamily protein (.1) AT5G25050 164 / 2e-44 Major facilitator superfamily protein (.1) AT5G25040 158 / 1e-42 Major facilitator superfamily protein (.1.2.3) AT5G10820 124 / 2e-30 Major facilitator superfamily protein (.1) AT1G64890 122 / 6e-30 Major facilitator superfamily protein (.1) AT5G54860 95 / 1e-20 Major facilitator superfamily protein (.1) AT1G04570 94 / 6e-20 Major facilitator superfamily protein (.1) AT2G33280 63 / 2e-10 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041600 [exp] 168 / 9e-46 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 167 / 2e-45 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 166 / 4e-45 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 162 / 1e-43 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 142 / 1e-36 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 144 / 2e-36 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 116 / 9e-28 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 105 / 3e-24 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 102 / 8e-23 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006106 [exp] 690 / 0 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 683 / 0 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 183 / 3e-51 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 181 / 2e-50 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 181 / 3e-50 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 177 / 4e-49 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 145 / 3e-37 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 142 / 3e-36 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10017090 [exp] 99 / 4e-22 AT5G54860 391 / 3e-133 Major facilitator superfamily protein (.1) Lus10024977 [exp] 89 / 1e-18 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF03092 [poplar] [flax] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Potri.010G085900.1 pacid=42796974 polypeptide=Potri.010G085900.1.p locus=Potri.010G085900 ID=Potri.010G085900.1.v4.1 annot-version=v4.1 ATGGCTTCAACAAACTCTAGGAGCTCATTCTCAATTTTACCCTCTCATCAAAATCCAATTTTATCCTCTCTCACCTTGTCTCCCCACTTCCAGATTCACC GGAAACGCTTATCCATTGTCTCTCACAGAAGAACTCGCCGGAGGCCACGGCGGAAACTAGCTGGGGGAAAGGATATGTCGGTTGCAATCAACATGCCCAC GCCATCTCACCGGCGTGACAAAAGCCAGGACTCGGTTTTGGATTCAACAAACAGTGCTGGTGAAAGAGAAATGTTAACAGCAGATGTTGAAGGGGAGATG AGCTCAACTAGTAAAAATGCTATGCGTATAAGCAAATACCTTATTAGCAGAATATGCTTTGGCGTGGACTTGTCACCAGATAATATTGCAGTAGCAATGG TGTATTTTGTTCAAGGTGTCTTGGGCCTTGCTAGGCTCGCTGTCAGTTTTTACTTGAAAGATGATTTGCATTTAGAACCTGCAGAGACAGCTGTGATATC CGGTTTTTCCGCGTTACCTTGGCTTATCAAACCTCTTTATGGGTTTATTAGTGATTCTGTTCCACTCTTTGGTTATCGAAGAAGGTCATACTTGGTTCTT TCAGGACTTCTCGGTGCGCTTTCTTGGAGTTTGATGTCTACCTTTGTTGATAGCAAGTACAGTGCTGCCTTCTGCATACTTCTTGGATCGCTTTCTGTTG CTTTCTCAGATGTTGTTGTGGATTCTATGGTGGTGGAGAGGGCTCGTGGGGAGTCACAAAGCATGTCAGGATCTCTTCAGTCTTTATGTTGGGGGTCGTC GGCTTTTGGTGGGATTGTAAGCTCTTACTTTAGTGGCTCTCTGGTGGATGCTTATGGTGTAAGGTTTGTTTTTGGTGTTACGGCGTTGCTACCTTTGATA ACATCAGCAGTTGCTGTTCTTGTGAGAGAACAGCGTGTGCTTGGTCCGGCAAGTGGACCGAGTCTTGCTTTGCCTGGTTCTGGTTTTCTGGAAAGCTCAA AGCAGCATATTGTTCAGTTATGGGATGCTGTTAAGCAGCCCAATGTGTTTCTTCCCACTTTATTTATTTTCCTGTGGCAGGCAACACCACAATCAGATTC TGCCATGTTTTTTTTCACCACAAATAAACTTGGTTTCACTCCAGAATTTCTTGGACGTGTCAAGCTTGTTACCTCAGTTGCATCACTGCTTGGAGTTGGA CTGTATAATGGCTTTTTGAAAAATGTTCCATTGCGCAAGATCTTTGTTGCTACTACTGTAACTGGTACAGCTCTTGGGATGACTCAGGTTTTCCTTGTTA CTGGTTTAAACAGAAAGTTTGGGATAAGTGACGAATGGTTTGCTATTGGGGATTCTTTGATTCTAACAGTCCTTGGTCAGGTTTCTTTCATGCCAGTTCT TGTGCTAGCGGCAAAGTTATGTCCGGAGGGCATGGAAGCTACACTTTTTGCAACCCTTATGTCCATTTCAAATGGAGGGAGTGTTCTTGGAGGGCTGATC GGTGCTGGTCTGACTCAGTTTTTTGGAGTCACAAAGGACAATTTTGACAACTTGGCCTTTTTGATTATTCTCTGTAATCTCAGCTCATTGCTTCCTTTGC CACTCCTAGGCCTCCTACCCAATGATAGGCCCGATGCCATTCCAAAGGAGAGTAGAGATATCGAGATGAAGTCCAATTGA
AA sequence Show only first row Show all	>Potri.010G085900.1 pacid=42796974 polypeptide=Potri.010G085900.1.p locus=Potri.010G085900 ID=Potri.010G085900.1.v4.1 annot-version=v4.1 MASTNSRSSFSILPSHQNPILSSLTLSPHFQIHRKRLSIVSHRRTRRRPRRKLAGGKDMSVAINMPTPSHRRDKSQDSVLDSTNSAGEREMLTADVEGEM SSTSKNAMRISKYLISRICFGVDLSPDNIAVAMVYFVQGVLGLARLAVSFYLKDDLHLEPAETAVISGFSALPWLIKPLYGFISDSVPLFGYRRRSYLVL SGLLGALSWSLMSTFVDSKYSAAFCILLGSLSVAFSDVVVDSMVVERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVDAYGVRFVFGVTALLPLI TSAVAVLVREQRVLGPASGPSLALPGSGFLESSKQHIVQLWDAVKQPNVFLPTLFIFLWQATPQSDSAMFFFTTNKLGFTPEFLGRVKLVTSVASLLGVG LYNGFLKNVPLRKIFVATTVTGTALGMTQVFLVTGLNRKFGISDEWFAIGDSLILTVLGQVSFMPVLVLAAKLCPEGMEATLFATLMSISNGGSVLGGLI GAGLTQFFGVTKDNFDNLAFLIILCNLSSLLPLPLLGLLPNDRPDAIPKESRDIEMKSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32040			Major facilitator superfamily ...		Potri.010G085900 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.003G138400 [exp]	6.92	0.8894
AT2G42130			Plastid-lipid associated prote...		Potri.016G045900 [exp]	7.68	0.8936
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.012G081700 [exp]	12.24	0.8632
AT2G28120			Major facilitator superfamily ...		Potri.009G006400 [exp]	14.00	0.8781
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158200 [exp]	14.24	0.8697	Elip1,Pt-ELIP2.2
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	14.79	0.8891
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G064700 [exp]	18.97	0.8649
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158000 [exp]	21.81	0.8575	ELIP2.1,Elip4
AT5G40420		OLE2, PA23, OLE...	oleosin 2 (.1)		Potri.012G083400 [exp]	22.58	0.8566
					Potri.012G031150 [exp]	26.94	0.8442

Compare expression of checked genes

Potri.010G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.