Plant FIBer expression Database

Potri.010G086100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05440 296 / 3e-98 C-8 sterol isomerases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G154400
[exp]
533 / 0 AT1G05440 302 / 2e-100 C-8 sterol isomerases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041200
[exp]
296 / 2e-98 AT1G05440 242 / 4e-77 C-8 sterol isomerases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF04622 ERG2_Sigma1R ERG2 and Sigma1 receptor like protein
Representative CDS sequence
>Potri.010G086100.1 pacid=42799799 polypeptide=Potri.010G086100.1.p locus=Potri.010G086100 ID=Potri.010G086100.1.v4.1 annot-version=v4.1
ATGAAAGCATACAGTGCATCAACATCACAATCCTCTGTGAAATCAAGCGCCACCAACCCGAACACCACGGCCATGGAAGAGAGAGATAGCTGTTACTTCC
CTGGTTGCAGAAAAGATGCCAATTGCAACTGTGATATTTGCTTGGCTAGCATCAATGCTACCCTTGACCTCATGCCAGTCACCATTCAAAAGTCCTCTCT
CACCAAGCTTTCTACTTCACGCGCCAACGTGGAATGTACTCCCCCGTCTTTTGATACTTCAATTATCTCCACACCGAGATCAATTTCTCGTCCTAAAATG
GATTCTCCAGCACTCAAATCAACAGCAAGATTGACCTTGAATCAAAAGAAAGTAAAGAAGAAAAAAGAAAGGTCTTTTGGTTCTTGCGGTGTTCTTTTTT
GGCTGGTTTTGGGATCAAGCTTGCTTTTTAGAGTAGAAACTGGGTTTTCTTGGGGGGTTTACAGGGTTTTAAGGCCTGTGTTTTCATCTGATATGGTTAG
GAGTATTGGTGAGAGATCTTGGGCTGTACAAGACTTGAACCGGAGGCTGAGGTTCTTGCAGAGTGAATTAAAAGGTTTTGTTGCAAATGGGAAGGTTTCA
AATTGCAGCTTTATGGATTCAATATGGGAAATCAATCAGGATGGGCTGCTTTTGAATTCACGGTGTGTCTTGTACAAGTCCGCAATGGAAGAGGTGAGCA
TATGGGGCTGGCCTTTGCAAACTGCAGGATTGCTCAAAACAGAATTTTCTTCGCGTTCATTTACAGTGTTGTCAGGCAGAGTTACAGAGTGGTCTGACGG
TAGGATTGGGTACTCAATTCGAAAAGCCAACACTTCATGGGTTCACAGGAATTGGGCTGCCTCTGTTGTCCAATTAGATCCCAACACATGGATTCTGGAG
TATGAGCGTAGCTTGATATTGAATAGCTCAACACTGTTTTCAGCAGTAGCAGAGATCTTCAAATACAGGATGTCAAGAGCTATGAAAAGTATGAATCCAG
TATTCTGGTTGTTCTCTGATTTTGAGCAACAATACAGAGTCTTTACAGCAAAAGACCGTGTCAACATCATCCCAACTTAG
AA sequence
>Potri.010G086100.1 pacid=42799799 polypeptide=Potri.010G086100.1.p locus=Potri.010G086100 ID=Potri.010G086100.1.v4.1 annot-version=v4.1
MKAYSASTSQSSVKSSATNPNTTAMEERDSCYFPGCRKDANCNCDICLASINATLDLMPVTIQKSSLTKLSTSRANVECTPPSFDTSIISTPRSISRPKM
DSPALKSTARLTLNQKKVKKKKERSFGSCGVLFWLVLGSSLLFRVETGFSWGVYRVLRPVFSSDMVRSIGERSWAVQDLNRRLRFLQSELKGFVANGKVS
NCSFMDSIWEINQDGLLLNSRCVLYKSAMEEVSIWGWPLQTAGLLKTEFSSRSFTVLSGRVTEWSDGRIGYSIRKANTSWVHRNWAASVVQLDPNTWILE
YERSLILNSSTLFSAVAEIFKYRMSRAMKSMNPVFWLFSDFEQQYRVFTAKDRVNIIPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05440 C-8 sterol isomerases (.1) Potri.010G086100
[exp]
0 1
AT1G67750 Pectate lyase family protein (... Potri.010G051800
[exp]
1.41 0.8620
AT1G21880 LYM1 lysm domain GPI-anchored prote... Potri.005G176700
[exp]
10.39 0.8438
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Potri.014G155900
[exp]
16.21 0.8664
AT1G79400 ATCHX2 cation/H+ exchanger 2, cation/... Potri.003G194200
[exp]
19.28 0.7867 Pt-ATCHX1.1
AT3G60660 unknown protein Potri.014G060000
[exp]
25.51 0.8609
AT3G06030 AtANP3, MAPKKK1... NPK1-related protein kinase 3 ... Potri.008G149500
[exp]
32.06 0.8541
AT1G20070 unknown protein Potri.005G241800
[exp]
32.32 0.8492
AT1G12240 ATBETAFRUCT4, V... VACUOLAR INVERTASE, Glycosyl h... Potri.003G126300
[exp]
34.17 0.7487
AT2G42910 Phosphoribosyltransferase fami... Potri.002G059700
[exp]
37.94 0.8038
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Potri.005G142200
[exp]
39.03 0.8488

Potri.010G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.