Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14820 841 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 563 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 503 / 9e-169 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 492 / 2e-165 MEF22 mitochondrial editing factor 22 (.1) AT4G21065 474 / 2e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 468 / 1e-156 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 472 / 1e-155 unknown protein AT2G22070 470 / 2e-155 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G66520 464 / 3e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 464 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031600 [exp] 569 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 556 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 544 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 541 / 0 AT3G22690 582 / 0.0 unknown protein Potri.018G071800 [exp] 534 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 509 / 3e-171 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 489 / 3e-165 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 491 / 6e-165 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 487 / 8e-164 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 557 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 551 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 491 / 2e-164 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 488 / 2e-163 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 477 / 3e-160 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 479 / 2e-158 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10014298 [exp] 472 / 3e-158 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 471 / 8e-158 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 473 / 9e-157 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031423 [exp] 469 / 2e-156 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.010G086200.1 pacid=42798844 polypeptide=Potri.010G086200.1.p locus=Potri.010G086200 ID=Potri.010G086200.1.v4.1 annot-version=v4.1 ATGTCCACCGTGACCACACTGCCCACAATACCTGTCCCACTCACTTCCATCGCCCTACATGCAGCTCTCTCCTCCACCTCCACCCCCACCTCCCTCCCCC ACCTCAAACAAATCCACGCCCAAGTCCTCCGCTCCAACCTCCCTCCTTCACTCCTCCTCGAACTCCTTCTCTCCTCTTCTTCCCTCGACTACGCCCTCTC CGTCTTCACACACCTCCCCAAATGCCACACTCCTCTTTCCAACAAACTCTTCCGCTCTTTATCTCGCAGCGCCAAGCCTGAAACTGCTCTTTTAGCATAT GAGAAAATAAGGTTGAAGGAAGGCTTGCTTGGTATTGACAGGTTTAGCTTTCCTCCATTGCTAAAAGCAGCTTCCAGAGCTTCTGGGTTAAATGAAGGGA AGGAGATTCATGGGGTTGCGACTAAATTGGGTTTTGACAAAGACCCGTTTGTTCAAACGGGCCTGGTGGGTATGTACGCTTCTTGTGACCGGATTTCGGA AGCACGATTGGTGTTTGATAAAATGTCTTATAGGGATGTTGTTGCCTGGAGTATTATGATTGATGGGTATCATCAGAGTGGACTTTATGATGATGTGCTG CAGCTTTTTGAAGAGATGAGGAGTTCCAATTTGAAGCCAGATGAAATGGTTCTGACAACCATAATATCGGCTTGTGGTCGAGCCCGAAATTTAAGTTATG GAGAAGCTATACATGATTTCATTATTGAAAATAATTTTGTGCTTGATACTTACTTACAGAGTGCACTTCTTACCATGTATGCAAGCTGTGGCTGTATGGA AATGGCTCAAAAATTGTTTACTAAGATCTCATCTAGGAACTTAGTTGTTTTAACAGCCATGATTTCCGGGTATTCGAGAGTTGGGAGAGTTGAAGATGCT CGCTTGATCTTTGACCAAATGGAAGAAAAGGACTTGGTTTGCTGGAGCGCAATGATCTCTGGTTACGCTGAGAGTGATAAGCCTCAGGAAGCTCTTAATT TATTTAGTGAAATGCAAGTTTTCGGAATCAAACCTGATCAAGTTACTATACTAAGTGTAATCTCAGCTTGTGCTCGTCTTGGTGTTCTAGATCGAGCTAA ATGGATTCATATGTATGTTGACAAGAATGGGCTTGGAGGAGCTTTGCCTGTCAACAATGCCCTTATTGATATGTATGCCAAATGTGGAAATTTGGGAGCA GCGAGAGGAGTTTTTGAGAAGATGCAAAGCAGAAATGTGATATCTTGGACAAGTATGATTAATGCTTTTGCTATCCACGGGGATGCCAGTAATGCACTAA AATTCTTCTATCAAATGAAAGATGAAAACATCAAGCCAAATGGGGTTACATTTGTTGGTGTGCTTTATGCTTGTAGTCATGCAGGGCTAGTTGAGGAGGG CAGGAGAACCTTTGCCTCAATGACAAATGAACACAACATCACACCCAAACACGAGCACTATGGTTGCATGGTAGATCTATTTGGTCGAGCTAACCTACTG AGAGATGCTCTAGAACTTGTGGAGACCATGCCCTTGGCACCTAATGTTGTCATTTGGGGATCCCTAATGGCTGCTTGCCAGATTCATGGAGAGAATGAGC TTGGAGAATTTGCTGCCAAGCAGGTCCTTGAGCTGGAGCCAGACCATGATGGAGCCCTTGTGCAATTATCTAACATTTATGCTAAAGACAGAAGGTGGCA AGATGTAGGGGAGCTAAGGAACTTAATGAAACAAAGAGGAATATCTAAAGAACGTGGATGTAGTCGGATAGAATTGAACAATCAAGTATACGAGTTTGTA ATGGCAGATAAGAAGCATAAGCAAGCAGATAAAATCTATGAGAAGCTAGATGAGGTGGTTAAGGAGTTGAAGCTAGTTGGCTATACTCCTAATACTAGTA GTGTTTTGGTTGATGTAGAAGAGGAAGGAAAGAAAGAAGTAGTTTTATGGCACAGTGAGAAATTGGCCCTTTGTTATGGGCTGATGGGTGAGGGAAAAGG GTCCTGCATCCGAATAGTTAAGAATCTGAGAGTTTGTGAAGATTGCCATACCTTTATTAAGTTGGTCTCGAAGGTTTATGGGATGGAGATTATTGTTAGA GACAGGACTCGGTTTCACCATTACAAAGCTGGCGTGTGCTCTTGTAATGACTATTGGTGA
AA sequence Show only first row Show all	>Potri.010G086200.1 pacid=42798844 polypeptide=Potri.010G086200.1.p locus=Potri.010G086200 ID=Potri.010G086200.1.v4.1 annot-version=v4.1 MSTVTTLPTIPVPLTSIALHAALSSTSTPTSLPHLKQIHAQVLRSNLPPSLLLELLLSSSSLDYALSVFTHLPKCHTPLSNKLFRSLSRSAKPETALLAY EKIRLKEGLLGIDRFSFPPLLKAASRASGLNEGKEIHGVATKLGFDKDPFVQTGLVGMYASCDRISEARLVFDKMSYRDVVAWSIMIDGYHQSGLYDDVL QLFEEMRSSNLKPDEMVLTTIISACGRARNLSYGEAIHDFIIENNFVLDTYLQSALLTMYASCGCMEMAQKLFTKISSRNLVVLTAMISGYSRVGRVEDA RLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGA ARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLL RDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSRIELNNQVYEFV MADKKHKQADKIYEKLDEVVKELKLVGYTPNTSSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVR DRTRFHHYKAGVCSCNDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.010G086200 [exp]	0	1
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	5.38	0.7646
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	6.70	0.7406
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.015G047600 [exp]	7.74	0.7612
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	9.89	0.7171
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	14.28	0.7330
AT1G15870			Mitochondrial glycoprotein fam...		Potri.001G047600 [exp]	22.47	0.7301
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	24.33	0.7112
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	26.15	0.7040
AT4G11690			Pentatricopeptide repeat (PPR-...		Potri.017G131600 [exp]	27.20	0.5968
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	27.34	0.7044	Pt-PURE.2

Compare expression of checked genes

Potri.010G086200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.