Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22530 165 / 2e-51 unknown protein AT4G14830 158 / 5e-49 HSP1 heat shock protein 20-like protein 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G154100 [exp] 249 / 1e-84 AT3G22530 140 / 2e-42 unknown protein Potri.002G051100 [exp] 142 / 2e-42 AT3G22530 127 / 3e-37 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010549 [exp] 212 / 1e-69 AT3G22530 164 / 1e-51 unknown protein Lus10004901 [exp] 209 / 1e-67 AT3G22530 167 / 9e-52 unknown protein Lus10000009 [exp] 0 / 1 AT3G22530 59 / 6e-14 unknown protein Lus10035239 [exp] 0 / 1 AT3G22530 59 / 6e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G086400.1 pacid=42798391 polypeptide=Potri.010G086400.1.p locus=Potri.010G086400 ID=Potri.010G086400.1.v4.1 annot-version=v4.1 ATGATCAACATTTTCTCTCCTTTTCCACTCCACAACCCCAACAAGATTTTGATTCCTATCGAGAAAATCAAGAAATTCTTACTTTCTTTAACCCTTATAG CATCTTTTGTTTCATTATTTATTTATTCTACCCATTTCACCACCAACGCACCAACAAATCGAGAAACCATGAAGGTGCATCCATTACCCAAGAAGAGAAA CAACATAACAATCCAATTCTACGATCATAGAGGAGACCCTTTAGTATCATCTTCTGGTGGGTCCCAACACAAGAAACTCAGGAGGCTACCCCACATATTC AGCCGGGTCTTGGAACTCCCCTTCCGGTCAGATGCTGACGTGTCGGTTGAGGAAAATCCTGATTGCTTTCGATTTGTTGCTGAAACAGATAATAACATCG GTGAAGTGAGGGCCCACACCGTTGAAATCTATCCTGGAGTAACTAAAATTGTGATTAGGCCAAATGGGTATCTAGATATATCTCCACTTGATGATTTGGA GTTGGATATGTGGAGGTTCCGGTTGCCGGAAACCACCAGGCCGGAGCTTGCGAGTGCGGTTCTGGCTGACGGAGAGTTGATTGTGACGGTTCCGAAAGGA GAGGTAGTGGAGGAGGAAGGGAATGGTAATAATAACAATGGCGAGTTTAGAGGAGGTATGGGAAATAATAGTAGTAATAATAATAATGCTAGGCTTGTGC TTGTACAGTGA
AA sequence Show only first row Show all	>Potri.010G086400.1 pacid=42798391 polypeptide=Potri.010G086400.1.p locus=Potri.010G086400 ID=Potri.010G086400.1.v4.1 annot-version=v4.1 MINIFSPFPLHNPNKILIPIEKIKKFLLSLTLIASFVSLFIYSTHFTTNAPTNRETMKVHPLPKKRNNITIQFYDHRGDPLVSSSGGSQHKKLRRLPHIF SRVLELPFRSDADVSVEENPDCFRFVAETDNNIGEVRAHTVEIYPGVTKIVIRPNGYLDISPLDDLELDMWRFRLPETTRPELASAVLADGELIVTVPKG EVVEEEGNGNNNNGEFRGGMGNNSSNNNNARLVLVQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22530			unknown protein		Potri.010G086400 [exp]	0	1
AT2G14910			unknown protein		Potri.001G298200 [exp]	1.41	0.8976
AT5G54930			AT hook motif-containing prote...		Potri.011G138700 [exp]	3.16	0.8935
AT1G14900		HMGA	high mobility group A (.1)		Potri.012G048500 [exp]	8.77	0.8703
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.004G204300 [exp]	9.64	0.8741	IDH1.1
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	10.00	0.8729
AT2G32600			hydroxyproline-rich glycoprote...		Potri.006G121300 [exp]	12.04	0.8714
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041400 [exp]	16.15	0.8632
AT5G07670			RNI-like superfamily protein (...		Potri.002G143200 [exp]	16.97	0.8569
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	17.49	0.8705
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.014G112700 [exp]	18.57	0.8512

Compare expression of checked genes

Potri.010G086400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.