Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05410 443 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G22520 114 / 1e-26 unknown protein AT4G14840 100 / 2e-22 unknown protein AT5G48160 44 / 0.0003 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153800 [exp] 131 / 1e-32 AT4G14840 329 / 7e-106 unknown protein Potri.010G086700 [exp] 122 / 8e-30 AT3G22520 320 / 5e-102 unknown protein Potri.002G221500 [exp] 44 / 0.0003 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 43 / 0.0005 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021915 [exp] 422 / 6e-144 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10010550 [exp] 393 / 1e-132 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041201 [exp] 342 / 5e-113 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10004900 [exp] 206 / 9e-62 AT1G05410 207 / 6e-63 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006124 [exp] 122 / 3e-29 AT3G22520 340 / 4e-106 unknown protein Lus10010551 [exp] 122 / 3e-29 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041202 [exp] 118 / 3e-28 AT3G22520 327 / 1e-104 unknown protein Lus10012327 [exp] 51 / 2e-06 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 48 / 1e-05 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G086600.4 pacid=42799607 polypeptide=Potri.010G086600.4.p locus=Potri.010G086600 ID=Potri.010G086600.4.v4.1 annot-version=v4.1 ATGTCCCCATCCAATGGCTCACCAGAATCTGGGACTCCATTTGAAGTGGAATTAATGGAGATTGATAAGGAAAGTAATAGAAGCACGCCTAGGGAAAGGG AAAACATTTTGAATCTAAGGCCAGTTGCACCTGATGAATGTGGTGAAGGTTTGCCATATGCTCCCGAGGATTGGCCAAATCTTGGTGATACGTGGACCTG GAGGGTTGGGAGGCGAGTTGCCATTACTGGCCATTATTTGGATAGATACCTTTACCTTCCAATTCGTCTTTGTCATCTTGAGAATACAACACGTAAGAAA CATGGTTTTGCCAGCAAGCTTTCAGTTGAGCGATATATCCGATCTGTATTTCCTAATGCAGACATTGGTAAATTTTTTGCTTCATTCAGTTGGAAGATCC CATCAAAGCAATCCTCCATAAATGGTAATGTCGAGGGGCACTTTTTTTTCCCTGTACCTTCTGAAGAGACAGCTGAACTTTTTCTGTCTGATTCCCAGCA TGATAGTGCGGGTTGTAAAGCTGGAAATAAGATGTGCACCAGTCTTGGGTTACAAACTGAAAATCAACCCATGGCTGCCATGTCTTGCGATATATGTTGC AGTGAACCTGGTTTCTGCGGTTATTGCTGCTGCATCCTCTGTTGCAAAACTATAAGCTCAAAACATGGAGGTTACAGCTACATAAAATGTGAAGCAATTG TGAGTGAGGGTCATATATGTGGCCATGTTGCTCACATGAATTGTGCTCTTCGGACCTATATGGCTGGCACTGTGGGAGGAAGCATCGGTCTGGATGCTGA GTATTACTGTCGGCGCTGTGATGCAAGGACAGACCTAGTGCCACATGTTACAAGGCTTTTGCGAACTTGCGAAACTGTTGATTCCCAGGATGAAATAGAG AAAATATTAAATCTTGGTTTCTGCATTTTGCGAGGTTCACAGAGAGCTGATGCAAAGGGATTGCTGAAACGCATTGAGGTAGCCATCACGAAGCTTAAAT GTGGGACTATTCTTGAAGATATCTGGAAAGTGGAAGGGGAAGTCTCAGCCATTTTGCCTGCCGTCTCTCCCAATGGAAATGCAATGCTGGAAGTTAGTAA TCATCAAGACATTCTGGACTTTAGAAAGAGCTCACCAGATGTGTCCATGTCTTCTGATAGCCAGACTGAATCTCTGAAACTTGAGGATGAGATCAATCAG GTCCTCCAGGCACTACAGGTTTCACAGGAAGCTGAGTACAAAATTGCAGAGGAACGACTTTATGCTCAAAAGAAATATCTTCAGAACCTTTACCAGCAGT TGGACAAAGAGAGGTCTGAATTGGCACGTCGCACGTTGATAACCAACCCAGATGATTTGCTGAGTGCTGTGTTGAGCAGGGTGGACCAGATAAAGCGGGA AGTGACAAAACTCAAGGATATGGAAGAAGTGGCCAATGGATTTGGAAGGACCTCAAAAGATATTCTTAAGGAACACTTTGGTTTGGAAGTTGAGAAATGA
AA sequence Show only first row Show all	>Potri.010G086600.4 pacid=42799607 polypeptide=Potri.010G086600.4.p locus=Potri.010G086600 ID=Potri.010G086600.4.v4.1 annot-version=v4.1 MSPSNGSPESGTPFEVELMEIDKESNRSTPRERENILNLRPVAPDECGEGLPYAPEDWPNLGDTWTWRVGRRVAITGHYLDRYLYLPIRLCHLENTTRKK HGFASKLSVERYIRSVFPNADIGKFFASFSWKIPSKQSSINGNVEGHFFFPVPSEETAELFLSDSQHDSAGCKAGNKMCTSLGLQTENQPMAAMSCDICC SEPGFCGYCCCILCCKTISSKHGGYSYIKCEAIVSEGHICGHVAHMNCALRTYMAGTVGGSIGLDAEYYCRRCDARTDLVPHVTRLLRTCETVDSQDEIE KILNLGFCILRGSQRADAKGLLKRIEVAITKLKCGTILEDIWKVEGEVSAILPAVSPNGNAMLEVSNHQDILDFRKSSPDVSMSSDSQTESLKLEDEINQ VLQALQVSQEAEYKIAEERLYAQKKYLQNLYQQLDKERSELARRTLITNPDDLLSAVLSRVDQIKREVTKLKDMEEVANGFGRTSKDILKEHFGLEVEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05410			Protein of unknown function (D...		Potri.010G086600 [exp]	0	1
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	14.14	0.8050
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	20.90	0.7314	Pt-DREB2.1
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	22.20	0.7200
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	24.81	0.7129
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.003G119000 [exp]	25.09	0.7139
AT4G11440			Mitochondrial substrate carrie...		Potri.003G127600 [exp]	29.39	0.7354
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.009G050600 [exp]	33.67	0.7072
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	57.44	0.7405
AT4G01810			Sec23/Sec24 protein transport ...		Potri.014G112600 [exp]	60.17	0.7081
AT2G35635		UBQ7, RUB2	RELATED TO UBIQUITIN 2, ubiqui...		Potri.005G011700 [exp]	61.59	0.6472

Compare expression of checked genes

Potri.010G086600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.