Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22520 320 / 5e-102 unknown protein AT4G14840 313 / 1e-99 unknown protein AT1G05410 125 / 1e-30 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153800 [exp] 873 / 0 AT4G14840 329 / 7e-106 unknown protein Potri.010G086600 [exp] 122 / 1e-29 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041202 [exp] 379 / 4e-125 AT3G22520 327 / 1e-104 unknown protein Lus10006124 [exp] 388 / 7e-125 AT3G22520 340 / 4e-106 unknown protein Lus10010551 [exp] 388 / 8e-122 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000233 [exp] 234 / 9e-74 AT3G22520 215 / 1e-66 unknown protein Lus10021916 [exp] 147 / 7e-42 AT3G22520 129 / 5e-36 unknown protein Lus10021915 [exp] 123 / 5e-30 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041201 [exp] 118 / 3e-28 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10010550 [exp] 91 / 5e-19 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G086700.2 pacid=42797448 polypeptide=Potri.010G086700.2.p locus=Potri.010G086700 ID=Potri.010G086700.2.v4.1 annot-version=v4.1 ATGTCAGATCCGCTGTACTCTCCTTCCAATAAACCTCACGATCACGGTCCACGGACTGCATTTGGTTTGATTTTCGGTCCAGATTATGGCTCAACAAGCT GTCAGCAGAATGAACAACAATTCATGGAGAACGATATCCCCCATGAGAGTAACGGTCACGTGCACCTGCTAGATGAGAAAAACAATTTCGATCACCAGAA GGAGGAATTTGTGGACGATGATGTCCATCATGAAAGAAATAGGGGTGGGCACCTGATAGATGAGCACAATTTATCTGGTCAGCAGAATGAGCAATTTATG GATAGTGATACCCCCAACAAGAGTGATGGTAGCAGGACCCCGATAGATGTGAACAATTCTCTCAGGCTAGTTATGCCAGGTGAAACTGGTGAAGGTTTGC CATATGCTCCAATAGATTGGCCGAATCCTGGTGATAATTGGGAATGGAGAGTTGGAAGGAGGGTTAACTCCTCCGGGTACTTCCAGGATAGATTCATTTA CCCTCCAAAAAGCATTCATGGAAAAAGGAAGAAGATGTTTGCTAGCAAGCCTGCTCTTGAAAGTTTTATTCGAACCAAATTCCCAAGTGCAGATGTTGAT GCATTCTTTGCATCGTTTACATGGAAGATACCAGCAAAAGTGCAGTCTCCAAAAGAAGTAAAACCTGCTCCTCTTCCTCTTGAGAATCCTCCTGAGGATG GAACTTTGAAAGTTCAAGAAGGGAATGTAGAAAATCCCCGTTATGGTCGGAGGCAAAGGAAGCAGATTTTACCCGAGTTAACTGAAGAAGCTGAAGAAAA GAAAAAAAAAACACCACGGTCCAGCCAGAGGAAAAGAAAACAGGATGCAAAACATGATACACCTACATCGGCATCCGCATCTAAGCGAAAAGCTACACGT TCTTCTAAACGATCTGTGTTTCATGCTGCTGGTGGTGAAATTGGAATAACTGAGACTGAACCTGCAGTTAATGTGATCCCGGAGGGTTTTGATAACTATC TCAGTTCTTTAGAAGACATTCTTACCCAACCTCACCCTGAAACCCAAGTATCATACTCTGCAGGCTCTGATACTCCTCTTACCGAAAGTGATATGGCTAA AGATCGAAGCAAGCTTTGTTCCCTTCTAGTCATGGATTTTCCCACTTTGGTCTCTTCCAGAAACATTTCCAAACTTACTAGTCTAGCTTCCAAACTACTG AAGGATCCCACCCTCAGTGCTGAACAACTTGTTAAGTTAAAATTGATTGAGGAAATCCCATCGTTCAGCGAGGTTTTTGTTGAGAGTAGGCAAACAATAG AGCGCGTTAACAATTTGTTTGGTATCCTTGAGGCAAACAAGGCGAAGGTTAACTCTCTGAGGAATGAATATAATGAATTGAAGGAAAGAGCAGACCAGCT CCAGTCACAGGTTGATTCCAACTTACTGACTGTGCAGGAAATTGACAATCAAATTTTTCAACTTCAGACCTGGCGAGGGGAGCTTGTTAGTACAATTGAG AATAACAAGGCAGCAAAGGTTGAGGTGGCCTCTGCTCAAGGGATGGTGGCAAATTCAATTCCAACTGTTGTGCGTGATATTCAGGTTGCCAACTCCAAAA TCTCAGAATGGGAGCTAAAAAGGACAAATGCTGAAAAGCGTGAAGCTGAAATTCTGGAAAAGTTTGCCCCTCTAAAAGGGTTTTCTTTGTAG
AA sequence Show only first row Show all	>Potri.010G086700.2 pacid=42797448 polypeptide=Potri.010G086700.2.p locus=Potri.010G086700 ID=Potri.010G086700.2.v4.1 annot-version=v4.1 MSDPLYSPSNKPHDHGPRTAFGLIFGPDYGSTSCQQNEQQFMENDIPHESNGHVHLLDEKNNFDHQKEEFVDDDVHHERNRGGHLIDEHNLSGQQNEQFM DSDTPNKSDGSRTPIDVNNSLRLVMPGETGEGLPYAPIDWPNPGDNWEWRVGRRVNSSGYFQDRFIYPPKSIHGKRKKMFASKPALESFIRTKFPSADVD AFFASFTWKIPAKVQSPKEVKPAPLPLENPPEDGTLKVQEGNVENPRYGRRQRKQILPELTEEAEEKKKKTPRSSQRKRKQDAKHDTPTSASASKRKATR SSKRSVFHAAGGEIGITETEPAVNVIPEGFDNYLSSLEDILTQPHPETQVSYSAGSDTPLTESDMAKDRSKLCSLLVMDFPTLVSSRNISKLTSLASKLL KDPTLSAEQLVKLKLIEEIPSFSEVFVESRQTIERVNNLFGILEANKAKVNSLRNEYNELKERADQLQSQVDSNLLTVQEIDNQIFQLQTWRGELVSTIE NNKAAKVEVASAQGMVANSIPTVVRDIQVANSKISEWELKRTNAEKREAEILEKFAPLKGFSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22520			unknown protein		Potri.010G086700 [exp]	0	1
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	4.58	0.8351
AT2G34930			disease resistance family prot...		Potri.012G034600 [exp]	6.32	0.8146
AT3G53270			Small nuclear RNA activating c...		Potri.004G126720 [exp]	7.74	0.8132
AT5G45540			Protein of unknown function (D...		Potri.015G114900 [exp]	7.74	0.8109
					Potri.005G256201 [exp]	8.83	0.7962
AT2G33170			Leucine-rich repeat receptor-l...		Potri.003G174900 [exp]	9.48	0.8039
AT1G78800			UDP-Glycosyltransferase superf...		Potri.001G393000 [exp]	9.89	0.8071
AT5G48440			FAD-dependent oxidoreductase f...		Potri.014G177300 [exp]	14.69	0.7762
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	16.24	0.8057
					Potri.010G026350 [exp]	18.46	0.8017

Compare expression of checked genes

Potri.010G086700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.