Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14850 964 / 0 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 516 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 494 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 475 / 8e-158 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 473 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 468 / 7e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 464 / 9e-155 MEF22 mitochondrial editing factor 22 (.1) AT3G02010 461 / 5e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 461 / 3e-151 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 439 / 9e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 504 / 9e-170 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 509 / 3e-169 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 496 / 7e-169 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 507 / 9e-167 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 498 / 1e-166 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 481 / 6e-160 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 480 / 2e-159 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 472 / 1e-157 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 469 / 4e-157 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006123 [exp] 1065 / 0 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010551 [exp] 779 / 0 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 492 / 5e-166 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 489 / 5e-165 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 488 / 7e-161 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 484 / 1e-159 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 492 / 3e-159 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 491 / 7e-159 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 478 / 2e-158 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 475 / 1e-157 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.010G086900.1 pacid=42797422 polypeptide=Potri.010G086900.1.p locus=Potri.010G086900 ID=Potri.010G086900.1.v4.1 annot-version=v4.1 ATGACCTTCCTCACCCCAAATTCACTCGCAACCATTCTCGAAACCGCCGTCTCAACTCACTCTTCTCTTCTCGGCCGAGCCACCCATGCTCAAATCCTCA AGACTCTCCAATGTACAATCCCTCCCTTCCTCTCCATCCACCTCATCAGCATGTATTCCAAACTCGACCTCCCTAACCCAGCCCAACTCCTCCTCCAACT CACCCCAACTCGCTGCGTCGTCACCTGGACCGCCCTCATTTCTGGCTCTGTCCAAAACGGTTATTTCTCCTCTGCTCTCCTTTATTTCTCTAAAATGCGC CGTGAGAACATCAAGCCTAACGATTTCACTTTCCCTTGCGCGTTCAAAGCATCCACTGCGCTTTGCTTGCCTTTTGCAGGGAAACAGATTCATGCGATTG CGTTGAAGTTGGGCCAAATTAATGATAAATTTGTTGGATGCAGCGCGTTTGATATGTACTCAAAAACTGGGCTTAAATTTGAAGCGCAGCGACTGTTTGA TGAAATGCCTCCAAGAAATGTTGCTGTGTGGAATGCATATATTTCCAATGCGGTGCTTGATGGGAGGCCAGGGAAAGCGATTGATAAGTTTATAGAGTTC CGCCGGGTGGGTGGAGAGCCCGACTTGATAACATTTTGTGCGTTCTTGAATGCCTGTGCTGACGCAAGGTGTTTGGACCTTGGGAGGCAGTTACATGGGC TTGTGATTCGCAGTGGGTTTGAAGGGGATGTGTCGGTTGCAAATGGGATTATTGATGTTTATGGGAAGTGTAAGGAAGTTGAATTGGCAGAAATGGTTTT TAATGGGATGGGGAGGAGGAATTCAGTTTCATGGTGTACAATGGTTGCTGCTTGTGAGCAGAATGATGAGAAGGAGAAGGCTTGTGTGGTGTTTTTGATG GGTAGGAAGGAAGGGATTGAGCTGACAGATTATATGGTTTCAAGTGTTATCAGTGCGTATGCAGGGATTTCAGGACTTGAATTTGGGAGGTCAGTTCATG CACTAGCTGTGAAAGCATGCGTGGAGGGCGATATTTTTGTCGGCAGTGCCCTTGTTGACATGTATGGTAAATGCGGAAGTATTGAAGATTGTGAGCAGGT CTTTCATGAGATGCCTGAAAGGAATTTGGTTTCTTGGAATGCTATGATTAGTGGGTATGCACACCAAGGGGATGTTGACATGGCCATGACACTGTTTGAA GAAATGCAGTCTGAGGCGGTAGCAAATTATGTAACACTGATCTGTGTGTTATCGGCTTGTAGTAGGGGAGGGGCTGTTAAATTGGGAAACGAGATTTTTG AGTCAATGAGGGACAGGTACAGGATTGAACCGGGAGCAGAGCATTATGCTTGTATTGTGGACATGTTAGGGCGGGCTGGAATGGTAGAGCGTGCTTATGA GTTTGTACAAAAAATGCCAATTCGTCCAACAATTTCAGTTTGGGGTGCTCTTTTAAATGCTTGTAGGGTGTATGGGGAGCCCGAGTTGGGTAAAATTGCA GCTGATAACTTATTCAAACTTGATCCCAAAGATTCAGGCAACCACGTGCTGCTTTCAAATATGTTTGCTGCTGCTGGAAGGTGGGATGAAGCAACCCTTG TGAGAAAAGAAATGAAGGATGTTGGGATCAAGAAGGGTGCCGGTTGTAGTTGGGTTACTGCAAAGAATAAGGTCCATGTCTTCCAAGCAAAGGACACATC CCACGAAAGGAATAGTGAGATTCAGGCAATGCTAGTTAAGCTAAGGACAGAAATGCAGGCGGCTGGCTACATGCCTGACACCAACTATGCTCTCTATGAT TTAGAAGAAGAAGAGAAAATGACAGAAGTTGGGTACCACAGCGAGAAGATTGCCCTTGCTTTCGGGCTTATAGCCCTCCCTCCTGGAGTACCTATAAGAA TCACAAAAAATCTCAGGATATGTGGTGATTGTCATAGTGCCTTCAAGTTTATCTCAGGCATTGTTGGGAGAGAAATTATTGTCAGAGATAATAATAGATT TCATCGGTTTCGGGATAGTCAATGCTCATGCAGAGATTTTTGGTGA
AA sequence Show only first row Show all	>Potri.010G086900.1 pacid=42797422 polypeptide=Potri.010G086900.1.p locus=Potri.010G086900 ID=Potri.010G086900.1.v4.1 annot-version=v4.1 MTFLTPNSLATILETAVSTHSSLLGRATHAQILKTLQCTIPPFLSIHLISMYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMR RENIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEF RRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLM GRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFE EMQSEAVANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIVDMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIA ADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYD LEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	0	1
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	2.82	0.9331
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	3.74	0.9271
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	3.74	0.9091
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	7.41	0.9163
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	7.48	0.9085
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	9.00	0.9219
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	9.00	0.9082
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	9.48	0.9072
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	10.90	0.8968
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	11.13	0.9194

Compare expression of checked genes

Potri.010G086900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.