Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 418 / 3e-142 unknown protein AT5G23570 61 / 2e-09 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) AT3G12550 50 / 3e-06 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G78810 49 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152900 [exp] 648 / 0 AT3G22430 409 / 2e-138 unknown protein Potri.009G147201 [exp] 171 / 9e-46 AT3G22430 148 / 3e-37 unknown protein Potri.010G235700 [exp] 160 / 4e-42 AT3G22430 125 / 4e-30 unknown protein Potri.008G024500 [exp] 148 / 7e-38 AT3G22430 127 / 1e-30 unknown protein Potri.003G188350 [exp] 73 / 2e-13 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 64 / 2e-10 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.018G137400 [exp] 64 / 2e-10 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 62 / 6e-10 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188000 [exp] 61 / 1e-09 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041203 [exp] 209 / 1e-65 AT3G22430 186 / 2e-57 unknown protein Lus10020567 [exp] 152 / 6e-41 AT3G22430 129 / 8e-33 unknown protein Lus10021917 [exp] 139 / 5e-39 AT3G22430 125 / 2e-34 unknown protein Lus10006278 [exp] 149 / 2e-38 AT3G22430 132 / 2e-32 unknown protein Lus10041205 [exp] 107 / 2e-25 AT3G22430 149 / 2e-40 unknown protein Lus10041204 [exp] 106 / 2e-25 AT3G22430 147 / 2e-40 unknown protein Lus10004302 [exp] 66 / 3e-11 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10002702 [exp] 57 / 2e-08 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 53 / 5e-07 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000949 [exp] 47 / 3e-05 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain
Representative CDS sequence Show only first row Show all	>Potri.010G087400.3 pacid=42796962 polypeptide=Potri.010G087400.3.p locus=Potri.010G087400 ID=Potri.010G087400.3.v4.1 annot-version=v4.1 ATGGCAGGAGGTTCCCACCCCAAATCCTCCACTCACAAACCCTCCTCCTCTTCCACCCCTGCCCCCCACCGCAAATCCCGTTGGGAATCTACCTCCAACA ACAACAACAATCCACCACCACCTCAATCCAACCAGAAACTCCCTAAACCAAACCCTTCCCCAAAGCCTAACACTGGGCGATCCCCCAAGCCCGCTACTCC TACTGCAGGCCCAATCCAACCTTCACAAGTCCCTCCGTTCCCGTTCCCAGACCTCGGCCCTCCTCCACCACCTACCTACGGCTTTCACATGCTTGAACGC CGCACTATTATGCTCGCCGACGGCAGCGTCCGTTCTTACTTAGCTCTCCCCCCAGATTACCAAGACTTCCCTCGTCCTCCTCTTCCGCCGCGGTTCCTTC ACGGTGGGCCCACCCCCGAATTTCTTCCCGGTGGGCCTCGCTTCCCTCCACGGAGCCCTGATGTGCTAGGTTTTCAAAATCAGAATAAGAGGAAATTTGA AGAGGAATTAGTGAAGCACGGGAATAGTAGTAGTAGTAACTATAACAACAACAATTCAAATGGGAGAAATTATACTTTGGGGGGTGCCGGGACTAGTAAT GCGGGGGATGAAATGAGAGCGGGGAAGCAAATGAGGATTAGTAGCGGTGATGGTGTGGGGTTTGTCACTAGTAATAATAATAGGAATGTTGGTGAAGTGA ACCAGAGTGAATTAAAGAAAGCGTTTTTGCATTTTGTGAAGGTGATTAATGAGAATGAGGCTGATAGGAAGAAGTATTTGGAGGATGGGAAGCAAGGGCG GCTTCAGTGTGTGGCTTGTGGCAGGTCTTCCAAAGACTTCCCAGACATGCATGCTCTTATAATGCACACGTACAGCTCAGATAATGCTGATGTGCGTGTG GATCACTTGGGCTTACATAAAGCTCTCTGTGTTCTAATGGGATGGAACCATTCAAAGCCTCCTGATAACTCAAAGGCCTACCAATTCTTACCTGCTGATG CAGCAGGAGCAAACCAGGATGATTTGATTATGTGGCCACCAATGGTGATAATTCATAACACAATTACAGGGAAGGGTAAAGATGGGCGCATAGAAGGTTT GGGAAACAGAGCAATGGATAGCAAAGTGAGAGATCTCGGATTTGTGGGTGGCAAGTCAAAGTCCTTGTACGGAAGAGACGGTCATCTAGGCATTACCCTT GTAAAGTTTGGTGGTGATCAATCAGGTCTGAAAGAGGCTGTACGGCTGGCAGACCACTTCGAGAAGGATAATCGTGGACGCAAAGCTTGGGGTTGCATAC AGCCTCTGACATTTGGCAAGGATGACGAGAAAAATCCAAACCTTGTGAAGGTGGATCGGAGTGGGGAGAAAAACAGGATTCTATACGGTTATCTTGCAAC AGTTGCTGATCTATACAAAGTTGATTTTGAGACAAGGAAGAAGGTCGTGATTGAGAGCCATCAGGAACATAAAGCATCCAAGTAG
AA sequence Show only first row Show all	>Potri.010G087400.3 pacid=42796962 polypeptide=Potri.010G087400.3.p locus=Potri.010G087400 ID=Potri.010G087400.3.v4.1 annot-version=v4.1 MAGGSHPKSSTHKPSSSSTPAPHRKSRWESTSNNNNNPPPPQSNQKLPKPNPSPKPNTGRSPKPATPTAGPIQPSQVPPFPFPDLGPPPPPTYGFHMLER RTIMLADGSVRSYLALPPDYQDFPRPPLPPRFLHGGPTPEFLPGGPRFPPRSPDVLGFQNQNKRKFEEELVKHGNSSSSNYNNNNSNGRNYTLGGAGTSN AGDEMRAGKQMRISSGDGVGFVTSNNNRNVGEVNQSELKKAFLHFVKVINENEADRKKYLEDGKQGRLQCVACGRSSKDFPDMHALIMHTYSSDNADVRV DHLGLHKALCVLMGWNHSKPPDNSKAYQFLPADAAGANQDDLIMWPPMVIIHNTITGKGKDGRIEGLGNRAMDSKVRDLGFVGGKSKSLYGRDGHLGITL VKFGGDQSGLKEAVRLADHFEKDNRGRKAWGCIQPLTFGKDDEKNPNLVKVDRSGEKNRILYGYLATVADLYKVDFETRKKVVIESHQEHKASK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22430			unknown protein		Potri.010G087400 [exp]	0	1
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.018G018900 [exp]	2.00	0.8972
AT2G30530			unknown protein		Potri.019G132300 [exp]	2.23	0.8842
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	2.82	0.8884
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	3.46	0.8833
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	3.46	0.8941	GTE910
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	3.87	0.8633
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.009G129600 [exp]	4.00	0.8727
AT5G17510			unknown protein		Potri.013G076800 [exp]	4.24	0.8717
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G327100 [exp]	4.24	0.8512	TCP20.1
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	4.58	0.8784	Pt-MKP1.2

Compare expression of checked genes

Potri.010G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.