Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14910 381 / 2e-134 HISN5B, IGPD HISTIDINE BIOSYNTHESIS 5B (.1.2.3) AT3G22425 377 / 4e-133 HISN5A, IGPD imidazoleglycerol-phosphate dehydratase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152701 [exp] 340 / 3e-118 AT3G22425 316 / 6e-109 imidazoleglycerol-phosphate dehydratase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024033 [exp] 393 / 6e-139 AT4G14910 387 / 1e-136 HISTIDINE BIOSYNTHESIS 5B (.1.2.3) Lus10041717 [exp] 384 / 3e-135 AT4G14910 382 / 6e-135 HISTIDINE BIOSYNTHESIS 5B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00475 [poplar] [flax] IGPD Imidazoleglycerol-phosphate dehydratase
Representative CDS sequence Show only first row Show all	>Potri.010G087600.2 pacid=42798392 polypeptide=Potri.010G087600.2.p locus=Potri.010G087600 ID=Potri.010G087600.2.v4.1 annot-version=v4.1 ATGGAGGTCTCAGGAGTCCTAAGCCGCACCTCTACTTTTTCTTCACTAACAAAACCAAGAAGGCTACCCACAACCACCATCTCTCACACAAATCTGGTGC CCACGCGCATTCACTACCCTAACCCAATCTTCTCATCAACTCCTTTACTAATGGATTTCCATACTACTACCACCACAAAACCACTTGCCACTCCACTTCA GGCCAACGGTTCCTCTCTAACCACCTCTTCTCCCATCGAATCCGGAAGCGCTCGGATTGGGGAAGTGAAGAGAGTTACTAAAGAGACAAATGTGTTTGTC AAGATTAACTTGGATGGAACTGGAATTGCTGATTCTTCTACTGGCATCCCCTTCCTCGATCACATGTTAGATCAACTTTCTTCGCATGGGCTTTTTGATT TGCATGTGAGGGCAACTGGCGATATTCACATTGATGATCATCACACTAACGAAGATGTTGCCCTCGCTGTTGGAACTGCTTTGCTGCAGGCGCTTGGGGA TAGGAAAGGGATTAATCGGTTTGGTGACTTCTCAGCTCCTCTTGATGAGGCATTAATACATGTTTCTTTGGATTTATCTGGCCGTCCATATTTAGGTTAT GATTTGCAAATTCCTACTCAGAGAGTTGGAAAATATGACACTCAGTTGGTGGAACACTTTTTCCAGTCATTGGTGAATACTTCTGGGATGACGCTGCACA TTCGGCAGCTTGCTGGAAGAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTTGCCAGGGCACTTCGACAAGCTACAGAATTTGACCCACGTCG CCTCGGGACCGTGCCAAGCTCAAAAGGGGTTCTGTCACGGTCGTAA
AA sequence Show only first row Show all	>Potri.010G087600.2 pacid=42798392 polypeptide=Potri.010G087600.2.p locus=Potri.010G087600 ID=Potri.010G087600.2.v4.1 annot-version=v4.1 MEVSGVLSRTSTFSSLTKPRRLPTTTISHTNLVPTRIHYPNPIFSSTPLLMDFHTTTTTKPLATPLQANGSSLTTSSPIESGSARIGEVKRVTKETNVFV KINLDGTGIADSSTGIPFLDHMLDQLSSHGLFDLHVRATGDIHIDDHHTNEDVALAVGTALLQALGDRKGINRFGDFSAPLDEALIHVSLDLSGRPYLGY DLQIPTQRVGKYDTQLVEHFFQSLVNTSGMTLHIRQLAGRNSHHIIEATFKAFARALRQATEFDPRRLGTVPSSKGVLSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	0	1
					Potri.006G028500 [exp]	1.41	0.9776
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.007G079200 [exp]	3.46	0.9471
AT4G25370			Double Clp-N motif protein (.1...		Potri.015G131700 [exp]	3.46	0.9532
					Potri.006G029500 [exp]	3.87	0.9487
AT5G23070			Thymidine kinase (.1)		Potri.006G015800 [exp]	4.00	0.9435
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	5.74	0.9549
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.004G073300 [exp]	6.00	0.9180
AT5G55210			unknown protein		Potri.001G356400 [exp]	7.74	0.9388
AT5G06130			chaperone protein dnaJ-related...		Potri.006G210500 [exp]	8.06	0.9085
AT3G24030			hydroxyethylthiazole kinase fa...		Potri.003G174400 [exp]	8.71	0.9301

Compare expression of checked genes

Potri.010G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.