Plant FIBer expression Database

Potri.010G088000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14930 365 / 3e-127 Survival protein SurE-like phosphatase/nucleotidase (.1)
AT1G72880 198 / 7e-61 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G088100
[exp]
568 / 0 AT4G14930 355 / 5e-123 Survival protein SurE-like phosphatase/nucleotidase (.1)
Potri.001G196800
[exp]
219 / 7e-69 AT1G72880 473 / 3e-167 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Potri.003G041000
[exp]
210 / 2e-65 AT1G72880 480 / 4e-170 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004909
[exp]
446 / 3e-159 AT4G14930 387 / 1e-135 Survival protein SurE-like phosphatase/nucleotidase (.1)
Lus10008390
[exp]
209 / 3e-65 AT1G72880 526 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Lus10015610
[exp]
207 / 1e-64 AT1G72880 522 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Lus10037627
[exp]
199 / 3e-61 AT1G72880 508 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01975 SurE Survival protein SurE
Representative CDS sequence
>Potri.010G088000.1 pacid=42800224 polypeptide=Potri.010G088000.1.p locus=Potri.010G088000 ID=Potri.010G088000.1.v4.1 annot-version=v4.1
ATGGAAAACCAGCCGACGATCATGGTGACCAACGATGACGGTATCGACGCACCAGGACTGCGAGCGCTGGTTCAGGTCTTGGTCTCTACCCGGCGATTCC
AGGTCCTTGTTTGCGCTCCGGACTCGGAGAAATCAGCTATGAGCCATAGTATTACATGGCGTGATCCAATTGCTGCTCGACGAGTGGAAATTGAAGGAGC
TACTGCCTATGCAATTGCTGGAACTCCAGCTGATTGTACTTCTTTAGGAATCTCCAAATCACTCTTTCCTTTAATTCCTGACCTGGTAATTAGCGGCATA
AACATGGGGAGCAACTGTGGTTATCACATTGTTTACTCAGGAACAGTCGCTGGTGCTCGAGAGGCCTTCTTTAATGAGATACCTGCAATCTCTGTATCAT
ATAATTGGTTTGGAGGTCAGAGCAAAGTTGAGAACTTCACTCTTTCTGCTGAGGCTTGCATACCAATAATAACTGCAGTACTCGTTGAGATCAAGAATAA
AACTTATCCTTTAAGGTGTTTTTTGAATATTGATCTTCCAACAGATGTTGCTAATAATAAGGGGTATAAGCTGACCAAGCAGGGTAAAAGCATATATAAA
ATGGGGTGGAGCCAAGTTACTTCTGACATGCAAGGAGGGAAAATGTTATCAACAATGACAATGGATACGGATTCAACTGCACCAATAGAGACTGGTGCAT
TAAATTTATCACAAGACCATCTTTTGTTCAAGAGAGAAGTATTAGGAGGGAAACTTGATGAAGGTGACATCGATGATGCAGACTTCAAATTTCTTCAGCA
AGGATATATTACTGTAACTCCCCTTGGTGCCCTCTCCCATGCAGAGATAGGCTGCCACTCATACTTTAAAGATTGGCTGCCAAGTGTTGGAGAACACCCG
TCTGCGTCGTCCTTATAA
AA sequence
>Potri.010G088000.1 pacid=42800224 polypeptide=Potri.010G088000.1.p locus=Potri.010G088000 ID=Potri.010G088000.1.v4.1 annot-version=v4.1
MENQPTIMVTNDDGIDAPGLRALVQVLVSTRRFQVLVCAPDSEKSAMSHSITWRDPIAARRVEIEGATAYAIAGTPADCTSLGISKSLFPLIPDLVISGI
NMGSNCGYHIVYSGTVAGAREAFFNEIPAISVSYNWFGGQSKVENFTLSAEACIPIITAVLVEIKNKTYPLRCFLNIDLPTDVANNKGYKLTKQGKSIYK
MGWSQVTSDMQGGKMLSTMTMDTDSTAPIETGALNLSQDHLLFKREVLGGKLDEGDIDDADFKFLQQGYITVTPLGALSHAEIGCHSYFKDWLPSVGEHP
SASSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14930 Survival protein SurE-like pho... Potri.010G088000
[exp]
0 1
AT2G44350 CSY4, ATCS CITRATE SYNTHASE 4, Citrate sy... Potri.001G230500
[exp]
4.79 0.7378 ATCS.2
AT5G42570 B-cell receptor-associated 31-... Potri.014G154800
[exp]
12.96 0.7050
AT5G61510 GroES-like zinc-binding alcoho... Potri.004G233800
[exp]
17.20 0.7209 Pt-TED2.2
AT4G17830 Peptidase M20/M25/M40 family p... Potri.001G143200
[exp]
29.08 0.7121
AT2G20560 DNAJ heat shock family protein... Potri.007G135800
[exp]
31.17 0.7117
AT3G02470 SAMDC S-adenosylmethionine decarboxy... Potri.017G108800
[exp]
33.04 0.6643 SAMDC.4
AT4G24940 ATSAE1A, AT-SAE... SUMO-activating enzyme 1A (.1) Potri.012G100800
[exp]
39.03 0.6813
AT4G15940 Fumarylacetoacetate (FAA) hydr... Potri.010G011000
[exp]
44.39 0.6361
AT4G10960 UGE5 UDP-D-glucose/UDP-D-galactose ... Potri.003G140900
[exp]
47.56 0.6789 RHD1.2
AT5G09680 RLF reduced lateral root formation... Potri.001G263800
[exp]
48.67 0.6662

Potri.010G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.