Plant FIBer expression Database

Potri.010G088100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14930 354 / 6e-123 Survival protein SurE-like phosphatase/nucleotidase (.1)
AT1G72880 193 / 6e-59 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G088000
[exp]
569 / 0 AT4G14930 365 / 4e-127 Survival protein SurE-like phosphatase/nucleotidase (.1)
Potri.001G196800
[exp]
210 / 3e-65 AT1G72880 473 / 3e-167 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Potri.003G041000
[exp]
200 / 2e-61 AT1G72880 480 / 4e-170 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004909
[exp]
421 / 4e-149 AT4G14930 387 / 1e-135 Survival protein SurE-like phosphatase/nucleotidase (.1)
Lus10008390
[exp]
202 / 1e-62 AT1G72880 526 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Lus10015610
[exp]
199 / 2e-61 AT1G72880 522 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Lus10037627
[exp]
192 / 3e-58 AT1G72880 508 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01975 SurE Survival protein SurE
Representative CDS sequence
>Potri.010G088100.3 pacid=42797426 polypeptide=Potri.010G088100.3.p locus=Potri.010G088100 ID=Potri.010G088100.3.v4.1 annot-version=v4.1
ATGGAACACCAGCCGACGATCATGGTGACCAACGATGACGGTATCGACGCACCAGGACTGCGAGCGCTGGTTCAGGTCTTGGTCTCTACCCGGCGATTCC
AGGTCCTTGTTTGCGCTCCGGACTCGGAGAAATCAGCTATGAGCCATAGTATTAAATGGCCTGATCCAATTGCTGCTCGACGAGTGGAAATTGAAGGAGC
TACTGCCTATGCAATTGCTGGAACTCCAGCTGATTGTACTTCTTTAGGAGTCTCCAAATCACTCTTTCCTAAAATTCCTGACCTGGTAATTAGCGGCATA
AACATGGGGAGCAACTGTGGTTATAACATTGTTTACTCAGGAACAGTCGCTGGTGCTCGAGAGGCCTTCTTTAATGACATACCTGCAATCTCTGTATCAT
ATAATTGGTTTCGACGTCAGGGCAAAGTTGAGAACTTAACTCCTTCTGCTGAGGCTTGCATACCAATAATAACTGCAGTACTCGTTGAGATCAAGAATAA
AACTTATCCTTTAAGGTGTTTTTTGAATATTGGTCTTCCAACAGATGTTGCTAATAATAAGGGGTATAAGCTGACCAAGCAGGGTAAAAGCATATATGAA
ATGGCGTGGAGCCAAGTTACTTCTGACATGCAAGGAGGGAAAATGTTATCAACAATGACAATGGATACGGATTCAACTGCACCAATAGAGACTGGTGCAT
TAAATTTATCACAAGACCATCTTTTGTTCAAGAGAGAAGTATTAGGAGTGAAACTTAATGAAGGTGACATCGATGATGCGGACTTCAAATTTCTTCGGCA
AGGATATATTACTGTAACTCCCCTTGGTGCCCTCTCCCATGCAGAGATAGGCTGCCACTCATACTTTAAAGATTGGCTGCCAAGTGTTGGAGAACACCCG
TCTGAGTCATCCTTATAA
AA sequence
>Potri.010G088100.3 pacid=42797426 polypeptide=Potri.010G088100.3.p locus=Potri.010G088100 ID=Potri.010G088100.3.v4.1 annot-version=v4.1
MEHQPTIMVTNDDGIDAPGLRALVQVLVSTRRFQVLVCAPDSEKSAMSHSIKWPDPIAARRVEIEGATAYAIAGTPADCTSLGVSKSLFPKIPDLVISGI
NMGSNCGYNIVYSGTVAGAREAFFNDIPAISVSYNWFRRQGKVENLTPSAEACIPIITAVLVEIKNKTYPLRCFLNIGLPTDVANNKGYKLTKQGKSIYE
MAWSQVTSDMQGGKMLSTMTMDTDSTAPIETGALNLSQDHLLFKREVLGVKLNEGDIDDADFKFLRQGYITVTPLGALSHAEIGCHSYFKDWLPSVGEHP
SESSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14930 Survival protein SurE-like pho... Potri.010G088100
[exp]
0 1
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008406
[exp]
10.09 0.9852
AT5G45950 GDSL-like Lipase/Acylhydrolase... Potri.004G051900
[exp]
13.71 0.9850
AT1G05835 PHD finger protein (.1) Potri.002G233000
[exp]
17.14 0.9843
AT5G50335 unknown protein Potri.015G091300
[exp]
17.43 0.9772
AT5G11130 Exostosin family protein (.1) Potri.018G025200
[exp]
19.28 0.9840
AT3G01140 MYB NOK, ATMYB106 NOECK, myb domain protein 106 ... Potri.010G165700
[exp]
22.71 0.9835
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.002G176966
[exp]
24.49 0.9071
AT1G11600 CYP77B1 "cytochrome P450, family 77, s... Potri.004G018800
[exp]
24.49 0.9713 Pt-CYP77.2
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.003G006000
[exp]
26.72 0.9832 CYP81S3,Pt-CYP81.3
AT1G24590 AP2_ERF ESR2, DRNL, SOB... FOR SUPPRESSOR OF PHYTOCHROMEB... Potri.010G046600
[exp]
28.14 0.9831

Potri.010G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.