Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05370 520 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 459 / 1e-160 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G22180 103 / 2e-24 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75170 98 / 1e-22 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 97 / 2e-22 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36640 89 / 1e-19 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 81 / 4e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 62 / 1e-10 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 56 / 5e-08 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 55 / 7e-08 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152100 [exp] 728 / 0 AT1G05370 499 / 2e-176 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G068700 [exp] 92 / 2e-20 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 91 / 8e-20 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 88 / 1e-19 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G261000 [exp] 87 / 4e-19 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 87 / 5e-19 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.017G063966 [exp] 85 / 2e-18 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 81 / 6e-17 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.007G025800 [exp] 81 / 8e-17 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041206 [exp] 616 / 0 AT1G05370 532 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10021919 [exp] 610 / 0 AT1G05370 522 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10033464 [exp] 89 / 2e-19 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 87 / 4e-19 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10020911 [exp] 88 / 6e-19 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10004684 [exp] 86 / 1e-18 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 84 / 3e-18 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 84 / 4e-18 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10010804 [exp] 81 / 4e-17 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 81 / 9e-17 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.010G088300.1 pacid=42800120 polypeptide=Potri.010G088300.1.p locus=Potri.010G088300 ID=Potri.010G088300.1.v4.1 annot-version=v4.1 ATGGGCAAGAAAGAACAGCAACTTCAACCACAGAAAGATCACAAAGACAATGATAGAAGTGAAGCTGTTCTCGAGCTTCTAAGAAAACATGCTCCACTCA CTGTTAAACAGGAGAAGTTCTGCAACAATGCTTGTGTGGAGAGGTTTCTAAGAGCAAAAGGTGATAATGTGAAGAAAGCTGCTAAGCACTTAAGGGCCTG CCTTTCTTGGAGAGAGAGTATAGGCACTGAGAATTTGATAGCGGATGAGTTCTCAGCTGAGCTAGCTGAAGGAGTTGCTTATGTTGCTGGTCATGATGAA GAATCCAGACCTGTTATGATTTTTCGAATCAAGCAAGATTACCAAAAGTTCCATTCACAAAAACTGTTCACTCGGTTGCTAGTGTTTACACTGGAGGTGG CAATAGGGACCATGCCAAGAAACGCAGAACAATTTGTTCTCCTCTTTGATGCAAGCTTTTTCAGGTCAGCATCGGCTTTTATGAATTTATTGCTCGGAAC TCTGAAAATTGTGGCTGAGTACTACCCAGGCAGGCTTTACAAGGCTTTTGTAATCGACCCGCCTTCTCTCTTCCCTTATTTATGGAAGGGTGTCCGTCCA TTTGTTGAGCTATCAACGGCCACGATGGTGGTATCTTCACTAGACTTTGAAGAATCACTGGAGTTCAATGACTTTTCCTCCTACCCTCGAGCCTCCTCCC TCCGATTGGATCCTTCGTCTGTCAAGTCAACGGCTAAGATTGGCTCATGCTCTTCCTCTAGATTTTCCTTCACCGTGTCCCACCATTTTGACTCCCTCAA GCCTTGGCACCTAACTTTGACTGACACGTCGGCATCAAAAGTAGGACCAACAAACCTCTCTTCTCTGGGCCCGGCCCTCATCTCTCCCCTCAACGCTAGA TCCTTTTCTTTTGCGTCACCAGTTGCCAGAACCCCACGTGGCAGCATGAACGGTGGCAGCTACACTAGGCTTGCCCAGAAAAGTCTCTTCCCATCAACCC CGTTGCCACAGCGTGTCACCACGAGTGACACACTCAAAATCTCTCAACCGCGGACCCCACGCCCCTCGTTCCTCCAATCACCTGCCTTGTTTTTCAAGAA GGAGTGCCACGTCAGCAAGGCAGACAGGTCTCGAGAATCGTTCGTGCCATTTTTGAAGTTTTATAGGAGGCCGTACGATGAGATGATTTATAGGTCAAAG ATGCGGCCTCCACTCGGGGGACTCATATCCATTGTCTCGCCTCACATCAAACGGCGCCACATGTCAGTATCTCAACGGTTTTAA
AA sequence Show only first row Show all	>Potri.010G088300.1 pacid=42800120 polypeptide=Potri.010G088300.1.p locus=Potri.010G088300 ID=Potri.010G088300.1.v4.1 annot-version=v4.1 MGKKEQQLQPQKDHKDNDRSEAVLELLRKHAPLTVKQEKFCNNACVERFLRAKGDNVKKAAKHLRACLSWRESIGTENLIADEFSAELAEGVAYVAGHDE ESRPVMIFRIKQDYQKFHSQKLFTRLLVFTLEVAIGTMPRNAEQFVLLFDASFFRSASAFMNLLLGTLKIVAEYYPGRLYKAFVIDPPSLFPYLWKGVRP FVELSTATMVVSSLDFEESLEFNDFSSYPRASSLRLDPSSVKSTAKIGSCSSSRFSFTVSHHFDSLKPWHLTLTDTSASKVGPTNLSSLGPALISPLNAR SFSFASPVARTPRGSMNGGSYTRLAQKSLFPSTPLPQRVTTSDTLKISQPRTPRPSFLQSPALFFKKECHVSKADRSRESFVPFLKFYRRPYDEMIYRSK MRPPLGGLISIVSPHIKRRHMSVSQRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.010G088300 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	2.23	0.9457
AT1G20070			unknown protein		Potri.005G241800 [exp]	2.44	0.9381
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.002G072200 [exp]	4.69	0.9187
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G035100 [exp]	5.65	0.9149
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.002G224600 [exp]	5.83	0.9440
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	6.70	0.9316
AT4G22190			unknown protein		Potri.006G283300 [exp]	8.83	0.9179
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	11.61	0.9208
AT1G29790			S-adenosyl-L-methionine-depend...		Potri.001G352700 [exp]	13.19	0.8930
AT3G05910			Pectinacetylesterase family pr...		Potri.013G000900 [exp]	13.56	0.9229

Compare expression of checked genes

Potri.010G088300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.