Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77780 224 / 8e-71 Glycosyl hydrolase superfamily protein (.1) AT1G77790 212 / 3e-66 Glycosyl hydrolase superfamily protein (.1) AT3G57270 199 / 4e-61 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT5G20340 188 / 9e-57 BG5 beta-1,3-glucanase 5 (.1) AT5G56590 191 / 3e-56 O-Glycosyl hydrolases family 17 protein (.1) AT5G20330 182 / 1e-54 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT4G16260 182 / 2e-54 Glycosyl hydrolase superfamily protein (.1) AT5G20390 180 / 7e-54 Glycosyl hydrolase superfamily protein (.1) AT3G57260 180 / 8e-54 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT2G26600 177 / 2e-52 Glycosyl hydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172000 [exp] 238 / 7e-76 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 225 / 3e-71 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 216 / 1e-67 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.016G057600 [exp] 193 / 7e-59 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 184 / 2e-55 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 184 / 2e-55 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.018G068600 [exp] 184 / 6e-54 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G048100 [exp] 179 / 1e-53 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G142800 [exp] 178 / 9e-53 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031037 [exp] 222 / 6e-70 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014110 [exp] 192 / 5e-59 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10040600 [exp] 196 / 2e-58 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039233 [exp] 191 / 9e-58 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1) Lus10004391 [exp] 192 / 5e-57 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 188 / 2e-55 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10035423 [exp] 181 / 3e-54 AT3G57270 266 / 3e-87 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 176 / 3e-52 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019801 [exp] 175 / 5e-52 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10032562 [exp] 174 / 3e-50 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.010G088500.1 pacid=42796872 polypeptide=Potri.010G088500.1.p locus=Potri.010G088500 ID=Potri.010G088500.1.v4.1 annot-version=v4.1 ATGTTAACACCTAAAATTGCTATGTGGATCATGGTGCTAACAGTGGCTGCAATTCACATCTCGATGGTCTTAGGTGGGGATGCTGGGATTATTTATGGAA GAAATGGAGATAATCTCCCATCCCCTAAACGAGTAATTGATTTTCTCACCGAGGACATGAACCATGCGATTTCATTAGTCCGGGTCTATGATGCCAATAC GGAAGTTTTAGAAGCTCTAAGTGGAACCAACTTGGTCGTAACCATTGGGGTTCCAGATGAAGCAATTGCCCATGTAGCTTCTAGCCAGGAAGCTGCAGAC AAATGGTTTCGAGACCACGTACTTACTTATGTTCACAAGGGTGTTCGGTTCCGATATATTTGTGTTGGCAACGAGGCAATTCCTGGTGTTGTTCAATCTC TTGTACCACAAGCAATTATTAATCTCTACAATTCAGTAAGGAAGGCAAGCGTAGATTATATCTATGTTACAACTGCAGTCGGGGGTAAAGTTCTGGAAAG CTCCTATCCTCCCTCAGCTGGTCGATTCGCGAATGGGGTCGACAAAATTATGAATAACCTCACGAATTATTTGTATAATATAGGGTCCCCGTTATTGATC AATTTGTACCCTTACCATGCCCTGGTCTCGGAGCCACAACATATTTCATTGGACTATGCCTTATTTCAGTCCCAAAAGCCAGTGTTTACAGATGGGGATT TAGAGTATTACAATCTTTTTGATGCTATGGTGGATGCATTTGTAGCAGCAATGGTAAGGGTGGTGCAACAGGAGGATGTCAAACTTGTCGTCGCCGAGAC CGGGTGGCCAACTGCAGGTGTTGGGTCGTATGCTTGCACCGAGAATGCTCGAATCTACAACCTTAATCTAAGGAAGCATGCAATTGAAAAGGGATGCACT CCGAGAAAGGCGGACATTAATTTGGAGGTTTACATCTCGGAGATGTTCAATGAGAATCTGCAACCGGACGAGTTTGAGAGAAATTTTGGAACTTTTTATC CCAACCTCACCGAGGTATATCAGTTGTGGCGCTGA
AA sequence Show only first row Show all	>Potri.010G088500.1 pacid=42796872 polypeptide=Potri.010G088500.1.p locus=Potri.010G088500 ID=Potri.010G088500.1.v4.1 annot-version=v4.1 MLTPKIAMWIMVLTVAAIHISMVLGGDAGIIYGRNGDNLPSPKRVIDFLTEDMNHAISLVRVYDANTEVLEALSGTNLVVTIGVPDEAIAHVASSQEAAD KWFRDHVLTYVHKGVRFRYICVGNEAIPGVVQSLVPQAIINLYNSVRKASVDYIYVTTAVGGKVLESSYPPSAGRFANGVDKIMNNLTNYLYNIGSPLLI NLYPYHALVSEPQHISLDYALFQSQKPVFTDGDLEYYNLFDAMVDAFVAAMVRVVQQEDVKLVVAETGWPTAGVGSYACTENARIYNLNLRKHAIEKGCT PRKADINLEVYISEMFNENLQPDEFERNFGTFYPNLTEVYQLWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77780			Glycosyl hydrolase superfamily...		Potri.010G088500 [exp]	0	1
AT4G01290			unknown protein		Potri.004G073400 [exp]	1.00	0.9977
AT5G66110		HIPP27	heavy metal associated isopren...		Potri.005G110400 [exp]	3.46	0.9943
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Potri.008G168900 [exp]	8.66	0.9945	Pt-RIC1.1
					Potri.016G032550 [exp]	10.58	0.9905
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.008G152000 [exp]	12.24	0.9897
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	14.28	0.9940
AT1G71350			eukaryotic translation initiat...		Potri.013G096600 [exp]	15.62	0.9790
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.019G081300 [exp]	16.12	0.9776
					Potri.009G036600 [exp]	16.24	0.9936
					Potri.009G020201 [exp]	17.49	0.9934

Compare expression of checked genes

Potri.010G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.