Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32120 901 / 0 HSP70T-2 heat-shock protein 70T-2 (.1.2) AT3G12580 319 / 7e-101 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 314 / 7e-99 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 313 / 9e-99 HSP70B heat shock protein 70B (.1) AT5G02490 307 / 3e-96 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 306 / 5e-96 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 304 / 1e-95 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 271 / 1e-82 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G42020 260 / 2e-78 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 259 / 6e-78 BIP1 heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152000 [exp] 1094 / 0 AT2G32120 899 / 0.0 heat-shock protein 70T-2 (.1.2) Potri.001G042700 [exp] 319 / 1e-100 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 315 / 2e-99 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 315 / 2e-99 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 312 / 3e-98 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 310 / 2e-97 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 310 / 3e-97 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 308 / 2e-96 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 288 / 4e-89 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041207 [exp] 945 / 0 AT2G32120 845 / 0.0 heat-shock protein 70T-2 (.1.2) Lus10021920 [exp] 919 / 0 AT2G32120 832 / 0.0 heat-shock protein 70T-2 (.1.2) Lus10002319 [exp] 323 / 4e-102 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 317 / 3e-100 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 303 / 1e-94 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 301 / 4e-94 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 305 / 2e-93 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10021345 [exp] 267 / 3e-82 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017306 [exp] 268 / 2e-80 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 265 / 5e-80 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Potri.010G088600.1 pacid=42800215 polypeptide=Potri.010G088600.1.p locus=Potri.010G088600 ID=Potri.010G088600.1.v4.1 annot-version=v4.1 ATGGAAGAACCAAAATACACTGTGGCATCTGATAGTGAAACCACTGGGGAGGAGAAATCTTCACCGGCTTTTGCAGAAATTGCAATTGGAATTGACATTG GGACTTCACAGTGCAGTATTGCAGTCTGGAATGGCTCCGAGGTAGAGCTCCTAAAGAACACCAGAAACCAAAAGTTGATGCGATCATATGTTACCTTCAA GGAAGAAGTCCCTTCAGGTGGAGTCAGCAATCAGATCTCCCATGAATATGAAATATTATCTGGAGTTGCAATTTTCAACATGAAACGACTGATAGGTAGA GTGGATACTGATCCTGTAGTTCATGCAAGCAAAAGGCTTCCATTTTTGGTTCAAACTTTGGATATTGGTGTTCGCCCATTTATCGCAGCTTTAGTGAACA ATGTTTGGAGATCCACCACGCCTGAAGAAGTCCTTGCAATATTTCTGGTTGAACTTCGAGCCATGGCTGAACTTCAGTTGAAGAAGCCCATAAGAAATGT TGTTCTAACCATTCCAGTGTCATTTAGCAGGTTTCAATTGACACGGATTGAACGTGCTTGTGCCATGGCTGGCCTCCACATCCTCCGGTTGATGCCTGAG CCAACGGCTGTGGCATTGTTATATGCACAGCAGCAGCAACAGACTGTGCATGAGAATATGGGAAGCGGAAGTGAGAAGAATGCCCTTATATTTAACATGG GTGCTGGGTATTGTGATGTAGCTGTTACTGCCACTGCTGGAGGAGTTTCACAGATTAAGGCTTTAGCAGGAGCTGCTATTGGAGGCGAAGACATACTGCA GAACATGATGCAGTATCTCTTGCCAAACTCAGAGAGCCTTTTCCTGAACCACAGAGTCAACGAGATCAAATCGTTGGGGTTGCTTCGAGTAGCAACCGAA GATGCAATCCATCAGCTCTCCTCGCGGAGCAGTGTTCAGGTGGATGTTGACTTGGGAAATGGATCCAAAATATATAAGGTGGTCACTAGGGAGGAATTCG AGCGAGTGAACCTTAAGGTGTTTGAAAAGTGTGAGAGCCTCGTAACACGGTGCTTGCGTGACTCAAAGGTAGACATAGAGGATTTGACTGATGTTATACT TGTAGGCGGGTGTTCATATATCCCAAAGATAAGAAACGTTGTCAAGGCTGTGTGCAAAAGAGAGGAACTTTACGAAGCAATAAATCCATTGGAAGCTGCA GTCTGTGGGGCAGCACTAGAAGGAGCAGTTGCATCAGGAATCACTGACCCCTTTGGAAGTTTGGATCTGTTAACAATCCAAGCTACCCCCCTTGGCATTG GAATTAGAGCAGATGGGAACAGCTTTGTCCCAATCATACCTAGAAATACCACAATGCCAGCAAGGAAAGAGTTGTTATTCACAACCACCCATGATAACCA AACCGAAGCTCTAATCCTTGTCTATGAAGGTGAGGGGACAAAGGTGGAAGAGAATCATCTTCTGGGCTATTTCAAGATCGTGGGAATCCCAGCTGCACCC AAAGGAGTTCCAGAGATAAATGTGTGCATGGATATTGATGCCTCAAATACGCTCAGAGTTTTTGCTGGAGTGGTGATTCCAGGAACTGATCAGCCAATGG CACCGTTTATGGAAGTCAGGATGCCTACAGTTGATGATGGGCATGGCTGGTGTGCTGAAGCCCTGAACCGGTCATATGGGTCGACTCTTGATCTGGTTAC CGTGCAGAAGAAGATGTGA
AA sequence Show only first row Show all	>Potri.010G088600.1 pacid=42800215 polypeptide=Potri.010G088600.1.p locus=Potri.010G088600 ID=Potri.010G088600.1.v4.1 annot-version=v4.1 MEEPKYTVASDSETTGEEKSSPAFAEIAIGIDIGTSQCSIAVWNGSEVELLKNTRNQKLMRSYVTFKEEVPSGGVSNQISHEYEILSGVAIFNMKRLIGR VDTDPVVHASKRLPFLVQTLDIGVRPFIAALVNNVWRSTTPEEVLAIFLVELRAMAELQLKKPIRNVVLTIPVSFSRFQLTRIERACAMAGLHILRLMPE PTAVALLYAQQQQQTVHENMGSGSEKNALIFNMGAGYCDVAVTATAGGVSQIKALAGAAIGGEDILQNMMQYLLPNSESLFLNHRVNEIKSLGLLRVATE DAIHQLSSRSSVQVDVDLGNGSKIYKVVTREEFERVNLKVFEKCESLVTRCLRDSKVDIEDLTDVILVGGCSYIPKIRNVVKAVCKREELYEAINPLEAA VCGAALEGAVASGITDPFGSLDLLTIQATPLGIGIRADGNSFVPIIPRNTTMPARKELLFTTTHDNQTEALILVYEGEGTKVEENHLLGYFKIVGIPAAP KGVPEINVCMDIDASNTLRVFAGVVIPGTDQPMAPFMEVRMPTVDDGHGWCAEALNRSYGSTLDLVTVQKKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	0	1
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	1.41	0.9970
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	1.41	0.9979	Pt-HSP17.13
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	2.23	0.9891
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	2.44	0.9889
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G076000 [exp]	3.46	0.9951
AT1G52560			HSP20-like chaperones superfam...		Potri.001G192600 [exp]	4.00	0.9949
AT1G03070			Bax inhibitor-1 family protein...		Potri.002G049000 [exp]	4.69	0.9836
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.003G178700 [exp]	5.91	0.9550
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	6.00	0.9819
AT2G29500			HSP20-like chaperones superfam...		Potri.001G254700 [exp]	6.32	0.9856

Compare expression of checked genes

Potri.010G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.