Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSAD1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03130 290 / 9e-101 PSAD-2 photosystem I subunit D-2 (.1) AT4G02770 289 / 2e-100 PSAD-1 photosystem I subunit D-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151600 [exp] 362 / 2e-129 AT1G03130 300 / 8e-105 photosystem I subunit D-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021923 [exp] 308 / 1e-107 AT1G03130 309 / 4e-108 photosystem I subunit D-2 (.1) Lus10041209 [exp] 308 / 1e-107 AT1G03130 306 / 5e-107 photosystem I subunit D-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02531 [poplar] [flax] PsaD PsaD
Representative CDS sequence Show only first row Show all	>Potri.010G089400.1 pacid=42800153 polypeptide=Potri.010G089400.1.p locus=Potri.010G089400 ID=Potri.010G089400.1.v4.1 annot-version=v4.1 ATGGCAGCTCAAGCCTCTCTCTTTACTCCTCCAACCCTCTCCACCCTAAAATCGAGCAACCAGGCTTTTGTTCCATGGAAACAGGCATCTTTTTTACCAA TATCTAATGTTAAGCCACAAAGAACCATGAAGGTTGCTGCTGCAGAGGAAACAGCTGTCAAAGAGGCTCCGGTGGGCTTCACTCCACCTGAGTTGGACCC GAGTACCCCATCACCAATTTTTGGTGGAAGCACTGGTGGGCTGTTGAGGAAAGCCCAGGTGGAGGAGTTTTATGTGATTACATGGGACTCCCCCAAGGAA CAGATATTTGAAATGCCGACTGGGGGTGCTGCCATCATGAGGGAAGGCCCTAACTTGCTCAAGCTGGCCAGGAAGGAGCAGTGCTTGGCTCTCGGGACTA GGCTAAGGTCCAAGTACAAGATCAAGTACCAGTTTTACAGGGTGTTCCCCAATGGAGAGGTGCAGTACTTGCATCCTAAGGATGGTGTCTACCCTGAGAA GGTGAACCCAGGGCGCCAAGGCGTGGGCCAAAATTTCAGGTCAATCGGAAAGAACGTTAGCCCAATTGAGGTCAAGTTCACAGGCAAGCAAGCGTATGAT TTGTGA
AA sequence Show only first row Show all	>Potri.010G089400.1 pacid=42800153 polypeptide=Potri.010G089400.1.p locus=Potri.010G089400 ID=Potri.010G089400.1.v4.1 annot-version=v4.1 MAAQASLFTPPTLSTLKSSNQAFVPWKQASFLPISNVKPQRTMKVAAAEETAVKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKE QIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQAYD L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.010G089400 [exp]	0	1	PSAD1.1
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Potri.004G175800 [exp]	2.44	0.9836	Pt-HPR.1
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.008G077400 [exp]	2.44	0.9814
AT5G55570			unknown protein		Potri.011G085700 [exp]	2.44	0.9841
AT5G23060		CaS	calcium sensing receptor (.1)		Potri.015G052200 [exp]	3.00	0.9836
AT1G11860			Glycine cleavage T-protein fam...		Potri.011G006800 [exp]	5.29	0.9735	gdcT1,Pt-GDCST.1
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Potri.008G200100 [exp]	5.65	0.9732	Pt-NCPGS.8
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	6.00	0.9819	PETC.1
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Potri.012G068500 [exp]	7.41	0.9787
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.019G117900 [exp]	7.74	0.9765
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	8.36	0.9808	PSAL.2

Compare expression of checked genes

Potri.010G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.