Plant FIBer expression Database

Potri.010G089600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14950 618 / 0 KMS1 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
AT1G05360 589 / 0 KMS2 Killing Me Slowly 2, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G151300
[exp]
772 / 0 AT4G14950 610 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.013G021700
[exp]
553 / 0 AT4G14950 545 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.005G032200
[exp]
551 / 0 AT4G14950 543 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010536
[exp]
640 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Lus10004916
[exp]
634 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09335 SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence
>Potri.010G089600.1 pacid=42800021 polypeptide=Potri.010G089600.1.p locus=Potri.010G089600 ID=Potri.010G089600.1.v4.1 annot-version=v4.1
ATGGTAATGGGGTCTGACAAAGAAGCAAAGGCCTCCTCTTCTCAAAACATGGACATGTCTATCGCAGGTCTTCACGAAAGGCATCAGCAGGAACTCGAGA
ATTTGACGATGACTGGACAACCCTTCAAAACATTGAAGTTTTTTGTTTTGGCTATGGTTCAATACTGTAAGAGATCAGTATTCTACCTTTTGGCTAAAGG
TGGTTGGCTAATGCTATTAAGCACAGTGGTAGCAGCTGTTGGAATTGTGCTTGTGACCATTGACGGCCCTCATGAAAAGCATGTTGAGGAACTTTCTAAT
TATCTGCGATTTGGATTGTGGTGGATTGCCCTTGGCGTTGCATCATCTATTGGTCTTGGATCTGGTTTGCATACTTTTGTTCTTTATTTGGGTCCTCACA
TTGCCTTGTTCACGATCAAGGCAATGCAATGTGGCCGAGTTGATTTAAAAAGTGCTCCATATGATACAATACAGCTGAAAAGAGTTCCTTCATGGCTTGG
CAAAGATTGCAAGGAGTTTGGGGACCCAGTGTTTCCATTCTCACATGGATTGCGGGTTCCTATTAGCAGCATTTTGTTCCAGGTCCAGATAGAGGCTATT
TTGTGGGGCGTTGGGACTGCACTTGGGGAGCTTCCTCCTTATTTTATCTCAAGGGCAGCACGTATATCAGGTAGCAAGTTGGATGCCATGGAAGAATTGG
ATGCTTCTTTAGATGAAAATAGTGGAATCATAGCTACTCGCCTCACAGCAATCAAACATTGGCTTCTGACCCACTCTCAACATTTGAACTTCTTCACGAT
TTTAGTGCTTGCTTCGGTGCCAAATCCTCTATTTGACCTTGCTGGCATTATGTGTGGACAATTCGGGGTTCCATTTTGGAAGTTCTTTGCAGCAACATTG
ATTGGAAAAGCAATTGTTAAAACTCACATACAGACGATTTTCATTATTTCTGTTTGCAACAATCAACTTCTTAACTGGATAGAGAATGAGTTGATCTGGG
TACTCAGCCTTATACCTGGTTTCGCTCCTGCTTTGCCTCACCTCACAGCAAAACTTCATGCAATGAAGGAAAAATATATGGCACCTGCACCTCCTGCATC
CTCAGATATGAAGGTCAAAAATTGGGATTTCTCATTTGCTGGAATGTGGAACACGGTTGTGTGGCTCATGCTCTTAAACTTCTTTTTTAAAATTGTGAAT
TCAACTGCACAGAGTTATCTGAAAAAACAGCAGGAGAAGGAGATAGGTGCATTGACAAATAGTGCATCAGCTTTGACACATTCAGATTAG
AA sequence
>Potri.010G089600.1 pacid=42800021 polypeptide=Potri.010G089600.1.p locus=Potri.010G089600 ID=Potri.010G089600.1.v4.1 annot-version=v4.1
MVMGSDKEAKASSSQNMDMSIAGLHERHQQELENLTMTGQPFKTLKFFVLAMVQYCKRSVFYLLAKGGWLMLLSTVVAAVGIVLVTIDGPHEKHVEELSN
YLRFGLWWIALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDLKSAPYDTIQLKRVPSWLGKDCKEFGDPVFPFSHGLRVPISSILFQVQIEAI
LWGVGTALGELPPYFISRAARISGSKLDAMEELDASLDENSGIIATRLTAIKHWLLTHSQHLNFFTILVLASVPNPLFDLAGIMCGQFGVPFWKFFAATL
IGKAIVKTHIQTIFIISVCNNQLLNWIENELIWVLSLIPGFAPALPHLTAKLHAMKEKYMAPAPPASSDMKVKNWDFSFAGMWNTVVWLMLLNFFFKIVN
STAQSYLKKQQEKEIGALTNSASALTHSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14950 KMS1 Killing Me Slowly 1, SNARE ass... Potri.010G089600
[exp]
0 1
AT2G38840 Guanylate-binding family prote... Potri.002G046000
[exp]
10.81 0.8081
AT5G49830 EXO84B exocyst complex component 84B ... Potri.010G249900
[exp]
13.85 0.7541
AT3G53110 LOS4 LOW EXPRESSION OF OSMOTICALLY ... Potri.006G119000
[exp]
46.64 0.7289
AT4G38510 ATPase, V1 complex, subunit B ... Potri.009G137800
[exp]
54.02 0.7348
AT5G51840 unknown protein Potri.012G132832
[exp]
62.16 0.7345
AT1G74910 ADP-glucose pyrophosphorylase ... Potri.012G075500
[exp]
77.07 0.7206
AT3G18295 Protein of unknown function (D... Potri.012G055200
[exp]
81.94 0.7058
AT5G51710 ATKEA5, KEA5 K+ efflux antiporter 5, ARABID... Potri.015G132400
[exp]
115.75 0.7189
AT1G08510 FATB fatty acyl-ACP thioesterases B... Potri.006G157200
[exp]
120.77 0.7058 FATB1.1
AT4G00740 QUA3 QUASIMODO 3, S-adenosyl-L-meth... Potri.014G075300
[exp]
123.90 0.6809

Potri.010G089600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.