Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22380 656 / 0 TIC time for coffee (.1.2) AT3G63180 93 / 1e-18 ATTKL TICKLE, TIC-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151200 [exp] 1810 / 0 AT3G22380 639 / 0.0 time for coffee (.1.2) Potri.002G052300 [exp] 376 / 3e-108 AT3G22380 219 / 2e-57 time for coffee (.1.2) Potri.005G210200 [exp] 335 / 1e-94 AT3G22380 290 / 6e-80 time for coffee (.1.2) Potri.003G029500 [exp] 218 / 3e-64 AT3G22380 81 / 3e-17 time for coffee (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010535 [exp] 895 / 0 AT3G22380 766 / 0.0 time for coffee (.1.2) Lus10002448 [exp] 585 / 0 AT3G22380 520 / 9e-165 time for coffee (.1.2) Lus10002447 [exp] 184 / 3e-50 AT3G22380 110 / 9e-26 time for coffee (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G089700.3 pacid=42798314 polypeptide=Potri.010G089700.3.p locus=Potri.010G089700 ID=Potri.010G089700.3.v4.1 annot-version=v4.1 ATGGATAGAAATAGAGAAGCAAGAAGAGTGGGTATGGCAGCTAGTAATGGTTTGTCTAGAAGAAGACACAGAAGTAGCAGCCTAAGAGACTCTCCAGAAG ATGATGGACCAGTGGAGTTGCAAGAAACAACGAAGCTGCGAGATCGAAGAAAGGATCGAGATCGAGATCGGGATCGGGATCGGGATAGAGACAGGGACCG GGACCGGGACCGTGAGAAAGACCGAGATAGAGATCGTATTAGCGGCAGGAGTAAGAGGAGGAGAGGGGAGAGACTGATGCACGGGAGCAATAAGGAAGAT GGAGAGCGAGACGAGACCTCAGACGAAGAGAGCGTTAATGATGACGAAGATGAAGATGACGATGATGCGGTTGGTGTTGCAGGAAGTTCCATGAGGATGC TCCCACCGAACCCTTCTTCTTTATCTTCTTCTTCTATGTCTAATCATCATCATAGGAAGAGCTTTCCGCCGCAGGCAAAAGTTTTTAGAGCCGCGCCGAC GATGACGAATACCACTGCTGCAGTTACACCGTGGAAGGCTACTGATGAGATGATTGGTGTGTCGGTTCCTAGAAAAGCTCGGTCAGCATCTACAAAGAGG TCACATGAATGTTGGACTTCAAGTGGTGGAGTTGGTAGTGAGCAAATTCACCGTCAAGCTTCAATATCTCCGGTAAGATCGAGTGGACCAGCTATGTTAG CTTCAGCTTCAGCTTCTCCGGCGGCTCCTGTCTCTCCTCCATCATCTTCCAATGCTTCAGTGAAAAAGAAGATGAAACCTAATGGACCGAAACAGAGACC TCCTAAATCTTCTTCAAAATCTACTTCTGCACAAGATGAGATTGAGTTTGAGATCGCTGAGGTGTTATATGGGTTGCTGAGGCAACCTCAAGGAGCTACA AAGCAAGAAATCATGGGAAATGATTCGATCAAGTTTGATTTCAGAGAAGCGAACCACAATAAAACTACCAGTGATGCTAAATCCAGAGTTTCCTCACCGA TCTCCAACTCACAGTCCACTGTTCCTCAGCCATCTTCTATCCCACCATCTAATTCTAGTTCTTCTGCTGCTCCCATGTCTGCAATTGCACCTAAGAGGAA AAGACCGCGCCCAGTCAAGTATGATGACGAGCATCCCACAAACTTTCCTGCTCGTAATAGTTCCATTTTGTCAATAGCCAAGGTTGACGTTGATCAGCCT GCAAGAATTGATTCTTCTAATTTAGAGAACTCGGGATCTGCAGCGGAAAATGGTGGAGTTTCACATGATTTATTGGCTAATCAAGCTGCTCCCGCAATGA CAGAGGCGCAGCTGCAGGAGGCGGTTAAGCTGGAGAATCATCCGATATCGGATTCTAAGCCCACGACTGAAGAATCAGAATGTAGAGATTTGGGTGGACT GATAGAAGAAACACGGTCTCCGAAGAAGGAATCTACTCCTAGTCTTAGATTGGGTGATGATTGCGAGAGTTTGACAGCAAATAAAGCGAATTTGATGGTC TCTGAGATTGATAGTCAGCGAGAAGAGAAGTTTCAGATAGATCTGATGTCACAGGCTCCTCCTCCATCAAGGTCATCTCCAGAAAGGGACAGTGAGATTG ATTTTGTGGCCGTAGATCCTAAATCTATGGTCACATATGGGGAAACGGAAAAGAAGCCTGTGATGGTCAAAGAAGATGAGAAAGCATTGAAAGTTGTAAA GGAAGATATAAATGTGGAACCTGTAGAGAAAAAGACAAAAGTTATTGGCGAACAAGTTGAATCCCAGAAGCCAATTGTTAATAAAGAGAGGAATATTGAT CTCCAGCTTGATCCAGGGAAGGGTGATAGAGATAGCGCCACTGTTACTATAAGTAGAAATAAGCTGCTTCAGCATGTGCAGCAGCAGCAGCAACCCAACA CAGAGAAAATTGCGCAATCCAGTTCTTTACCTTTGCCAATGTCCATGACTGGCTGGCCCGGTGGGCTTCCTCACATGGGATATATGGCACCTCTACAAGG AGTTGTATCCATGGATGGAAGCACTGTGTCTTCTGCAGCCATACAGCCTCCTCATTTAATTTTTAGCCAACCACGGCCAAAAAGGTGTGCAACACATTGC TACATTGCAAGGAATATTCATTGTTACCAGCAATTTACAAGGATGAATCCTTTCTGGCCACCAGCTGCTGGTTCTGCTTTACAATATGGGGCTAAAGCGT GCAATATGAATGTGGTGCCATCCGCTGACTTGCATGCAGGTAGAGGTGTGAATTCTGCGCAAGAAAAGGGACAGAGTCTTGCCATTTTTCCTGGTCCCTG TGGGAAGGAGAAGAATTCTCAAGGTGCCAACATTGCAGAAGCTGCACAGAGAAAGCAGATTTTGCTCCAGCAAGCCCTGCCGCCAGGTGCTCCTAGTAAT ATCATGCATGGACCCACTTTCATCTTCCCATTGAATCAACAACAAGCTGCTGTTGCTGCTGCTGCAGCAGCAGCAGCAGCTTCTGTCCGACCTGGAAGTG TGAAGTCTCCTCCTGCTGCAGGCAGTGTGGCCTCTTCAAGTGTCTCAAGTTCTGCTTCAATGAGTTCCACAGCATCAGCTATAGCTGGTCCTACACCAAT GAGCTTCAACTACCCGAATCTCCCAGGCAATGAAACCCAATACTTGGCAATTATGCAGAATGGAGCGTTCCCGATTCCCATACCTGCTCATGTTGGGGCC GCAGCAGCTTATAGAGGAACCCATCCTCAGGCAATGCCTTTGTTTAATGGATCGTTTTATTCTTCTCAAATGCTCCATCCTTCACAGCTTCAGCAGCAGC AGCCATCCACTAAGACACAACAAAGCCAACAAGGCCATCAAAATCCGAGCATTACCAGTGGTTCCTCATCATCCCAGAAGCATTTGCAGAATCAGCAGCA GAGATTGTATGGCAGTGGAGTTGGTGGAGATGGCGGAAATCTGCAAGGTTTTCCTGGCCCTAAAAACCAGCTGCCCCATTCCCTGCCAAACCAGCAACGG CAGCAGATGCAAAATCAGAATGTTTCTCACCAAGCTCGTCAACTCGAGAGTGAATTTGGTGGTGAAGACAGCCCTTCAACTGCTGACAGTCAAGTCTCCC GTCCAAATATGAGTCATTATGGCCAGAATTTAATGCCAATACATCCAGCAAACTTTGCTTTGATGAATCCCACACCGATGAGTGGTGCCCATAGTGCAAG TGGCAATACTAGTGAAAAGAAACCCCAGCAACCACAAACACAGATCTCTAAGGCTGGGGCTGAACCTTCAACCTCTCAGGCTTTTGCCATGTCATTTACT TCCATCAATGGAACCACTGCTTCCCCGGGACTTGATTTTTCATCAATTGCACATGATCATGCTCTTCTACAAAGCCTCCCAGAGGCAGCAAGGCATGGAT ATCACTTAATTGCTGCTGCCCAAGCAGCACAGCAGAAGAAGAATTACCGTGTTTCTGAAGAAGGGAAAACTGGAGGAAATGACACTTCTAACGTGGAAGA AGAGAGGAAGGCCATTGCAGGAGTAAAGGCTCCATTAACTGCTGGGCAGTCAATTGTGTTCTCTCGGGCAGATTTAACGGACTCCCCCATTTCAACAATG CCAGTCAACAATGTCATTGATAGCTCAGCCCGAACTCTTAACCTTGGGACTACTCCTGCTCGGACCTCTGGCTCTGTTATGTCAGCTACTATCAGTGGTG CAAATGCACCAAGTATACAGCAGCAGATGCAGCGGAATCAGCAGCAGCAGCAGCAGCAGCAGCAAATTCTTCAGCTTCAGAAGCAGCAGCACCAATTTGT GGCTGCAGCTTCCTCTCGTAGTAAAACCCCAGCAACTAGCAATGGAAGTGCTTATCCCGATCATATTTCATCATCATCAGCCATGGCCACCAAGTTCCCT AATCCACTTTCTGCTTTTCCTCAAAATTTTGTTCAAAACAGCAGTAGCCCTGCTCAATCACCCCAGTGGAAAAATTCCGTGAGGACCACCACCTCTCAAG TTCCTTCTCCATCTCTAACCCCAGCTTCACCAACCCTCAAAAATCTTCCCCAACAACAAGGCCGAACACAAGGAGGTCACACACAGATATCTTTTGCGGC TAACCAAAAACCATCTGCTTCGCCACAAGGGCAACCAAATCCCAGCAGTAACCAATCCCCATCTCCTCCGATGATGGTTGGTTCTCCCACAACATCAATT TCTAAGAGTGCAGGTGGAAGTCCGAGGACATCCGCTTCCACGGGTAACAAAGGTGGTCAATCTTCTACGTTATCATCTCAACAATCCAACTCTGCATCAG TACCTGTGCAAAAATCGTCTCCAGTTGGGGGAAGAAATGTTCCATCAATCCTTGGTCATCCTCACAACACCTCTTCATCTAACTCTGGTACAAAGCCTCA AATGTCACATCAACAGCCGCTATCAAAGCATGCACTCCAACAGGCTCAGGCTCAGCTAATGTACACTAATGGTTATATGCAAGCTCATGCGGCAAGTTCA ACAAATACTACACCAGCGGGTGGTGGGTTTTATCTCCAAAGACACCGTAGTGATCAGCAGCAGCAGCAATCACAAGGCACTTCAGCTACCTCCTCTACAG GGATGTTGTCATTATGTCCTCCAGTCACACTTGCCTTTACCAGTAGTACTGATCCTGCAAAGGCAGCTGCTAACAATATGAAAGGAGGTGGCTTACCTTC ACAGGGTCTTATCCATGCCCAATTTGCTGCTGCACATCCCGCTGGAAAGCCGCATCAGATTTTACCTGCTGGCTTCTCTTATGTTCATCCTGTTCCCACT GTGGTTCAGGTGAAACCGGCAGAGAAGAAACAACCTGCTGGCGAATAG
AA sequence Show only first row Show all	>Potri.010G089700.3 pacid=42798314 polypeptide=Potri.010G089700.3.p locus=Potri.010G089700 ID=Potri.010G089700.3.v4.1 annot-version=v4.1 MDRNREARRVGMAASNGLSRRRHRSSSLRDSPEDDGPVELQETTKLRDRRKDRDRDRDRDRDRDRDRDRDREKDRDRDRISGRSKRRRGERLMHGSNKED GERDETSDEESVNDDEDEDDDDAVGVAGSSMRMLPPNPSSLSSSSMSNHHHRKSFPPQAKVFRAAPTMTNTTAAVTPWKATDEMIGVSVPRKARSASTKR SHECWTSSGGVGSEQIHRQASISPVRSSGPAMLASASASPAAPVSPPSSSNASVKKKMKPNGPKQRPPKSSSKSTSAQDEIEFEIAEVLYGLLRQPQGAT KQEIMGNDSIKFDFREANHNKTTSDAKSRVSSPISNSQSTVPQPSSIPPSNSSSSAAPMSAIAPKRKRPRPVKYDDEHPTNFPARNSSILSIAKVDVDQP ARIDSSNLENSGSAAENGGVSHDLLANQAAPAMTEAQLQEAVKLENHPISDSKPTTEESECRDLGGLIEETRSPKKESTPSLRLGDDCESLTANKANLMV SEIDSQREEKFQIDLMSQAPPPSRSSPERDSEIDFVAVDPKSMVTYGETEKKPVMVKEDEKALKVVKEDINVEPVEKKTKVIGEQVESQKPIVNKERNID LQLDPGKGDRDSATVTISRNKLLQHVQQQQQPNTEKIAQSSSLPLPMSMTGWPGGLPHMGYMAPLQGVVSMDGSTVSSAAIQPPHLIFSQPRPKRCATHC YIARNIHCYQQFTRMNPFWPPAAGSALQYGAKACNMNVVPSADLHAGRGVNSAQEKGQSLAIFPGPCGKEKNSQGANIAEAAQRKQILLQQALPPGAPSN IMHGPTFIFPLNQQQAAVAAAAAAAAASVRPGSVKSPPAAGSVASSSVSSSASMSSTASAIAGPTPMSFNYPNLPGNETQYLAIMQNGAFPIPIPAHVGA AAAYRGTHPQAMPLFNGSFYSSQMLHPSQLQQQQPSTKTQQSQQGHQNPSITSGSSSSQKHLQNQQQRLYGSGVGGDGGNLQGFPGPKNQLPHSLPNQQR QQMQNQNVSHQARQLESEFGGEDSPSTADSQVSRPNMSHYGQNLMPIHPANFALMNPTPMSGAHSASGNTSEKKPQQPQTQISKAGAEPSTSQAFAMSFT SINGTTASPGLDFSSIAHDHALLQSLPEAARHGYHLIAAAQAAQQKKNYRVSEEGKTGGNDTSNVEEERKAIAGVKAPLTAGQSIVFSRADLTDSPISTM PVNNVIDSSARTLNLGTTPARTSGSVMSATISGANAPSIQQQMQRNQQQQQQQQQILQLQKQQHQFVAAASSRSKTPATSNGSAYPDHISSSSAMATKFP NPLSAFPQNFVQNSSSPAQSPQWKNSVRTTTSQVPSPSLTPASPTLKNLPQQQGRTQGGHTQISFAANQKPSASPQGQPNPSSNQSPSPPMMVGSPTTSI SKSAGGSPRTSASTGNKGGQSSTLSSQQSNSASVPVQKSSPVGGRNVPSILGHPHNTSSSNSGTKPQMSHQQPLSKHALQQAQAQLMYTNGYMQAHAASS TNTTPAGGGFYLQRHRSDQQQQQSQGTSATSSTGMLSLCPPVTLAFTSSTDPAKAAANNMKGGGLPSQGLIHAQFAAAHPAGKPHQILPAGFSYVHPVPT VVQVKPAEKKQPAGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22380		TIC	time for coffee (.1.2)		Potri.010G089700 [exp]	0	1
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	1.00	0.9186
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	2.82	0.9082
					Potri.008G043250 [exp]	3.46	0.9014
AT1G15780			unknown protein		Potri.003G012400 [exp]	5.19	0.9029
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.005G202000 [exp]	7.54	0.8679
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	8.06	0.9001	HAC901,Pt-HAC1.4
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	8.83	0.8929
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Potri.019G050950 [exp]	10.48	0.8765
AT1G53163			unknown protein		Potri.001G398000 [exp]	11.61	0.8608
AT1G15780			unknown protein		Potri.001G204900 [exp]	12.12	0.8880

Compare expression of checked genes

Potri.010G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.