Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26240 1151 / 0 ATCLC-D, CLC-D chloride channel D (.1) AT5G33280 499 / 3e-166 Voltage-gated chloride channel family protein (.1) AT5G49890 496 / 1e-164 ATCLC-C, CLC-C chloride channel C (.1) AT5G40890 474 / 2e-156 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT3G27170 473 / 1e-155 ATCLC-B, CLC-B chloride channel B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001500 [exp] 516 / 1e-172 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 510 / 4e-170 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.004G228300 [exp] 503 / 2e-167 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.001G331700 [exp] 495 / 3e-164 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.018G124100 [exp] 486 / 5e-161 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.T046200 [exp] 464 / 5e-152 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 459 / 4e-150 AT5G49890 935 / 0.0 chloride channel C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002453 [exp] 1242 / 0 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 1221 / 0 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10007433 [exp] 517 / 1e-172 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 509 / 1e-169 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 498 / 1e-163 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 475 / 2e-156 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10041567 [exp] 164 / 4e-45 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 89 / 9e-20 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.010G090100.1 pacid=42799056 polypeptide=Potri.010G090100.1.p locus=Potri.010G090100 ID=Potri.010G090100.1.v4.1 annot-version=v4.1 ATGTTATCGAATCAATTGCATAATGGAATGGAGACTGCGAAGCTATTGTGGTCTCGGATTCCAAGCTCAGAGGACGGTGAGGTTGACGGTGTTAGCATGT TGAGAACCAGCAATGGAAACACTGCTGAGAGTCTTGACTATGAAGTTATCGAGAATCAGGCGTATCGATATGAACAGGCGCAAAGAGGGAAGCTTTATGT TGGATATCAAGTGGTAGTTAAGTGGTTCTTAGCTTTGCTCATTGGTATTGGTACTGGATTAGCGGCTGTTTTCATCAATATATCTGTCGAGAATTTTGCA GGCTGGAAGTTTTCTTTGACGTTTTCAATAATTCAGAGATCATATTTTGCTGGATTTGTAATATATGTATTAATTAACTTGGTTTTAGTCTTTTCATCTG TATATATCGTTACACATTTTGCACCTGCGGCAGCAGGTTCTGGTATTCCAGAAATTAAGGGTTATTTGAATGGGCTTGATATTCCTGGTATTCTACTCTT CAGAACTTTGATTGGAAAGATATTTGGAAGCATTGGTTCTGTGGGAGGTGGCCTTGCTTTAGGAAAAGAAGGTCCTCTTGTTCATACTGGTGCTTGTATT GCTTCCTTGCTTGGACAAGGTGGATCTACAAAATATCATCTAAGTTTGAGGTGGCTTCAAGTTTTCAAGAGTGATCGCGATCGTCGTGATCTTGTGACCT GTGGGTGTGCGGCTGGTGTTGCTGCTGCTTTTAGAGCTCCTGTTGGTGGTGTATTATTTGCTTTGGAAGAAGTTACATCCTGGTGGAGGAGTCAACTTAT GTGGCGTGTCTTTTTTACCTCTGCTGTTGTGGCGGTTGTGGTGCGTACTGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGGCATTTTGGCTCTGGTGGT TTCATAATATGGGACACGTCAGATGGTCAAGAGGACTATTCTTTTGGGGAGTTACTTCCAATGGCAGTTATTGGGGTTATTGGTGGTCTACTTGGTGCGT TATTCAATCAGCTTACTCTTCATATAACCTACTGGCGACGGAATTATCTGCACAAGAATGGGAACCGAGTGAAGATTATTGAAGCATGCCTCATCTCTGT TATTACTTCAGCTATTTCCTTTGGACTACCACTTCTAAGAAAATGCAATCCATGCCCTGAATCAGATCCTGACTCTGGCATTGAATGCCCAAGGCCCCCA GGGATGTATGGAAATTATGTAAATTTTTACTGTGGCAAGGACAAGGAATACAATGATCTTGCAACGATTTTCTTTAATACTCAGGATGATGCCATAAGGA ATCTGTTTAGTGCAAAGACAATCCATGAGTTCAGTGCCCAGAGTTTATTGACGTTTCTGGTTATGTTTTATACTTTAGCAGTGGTGACATTTGGTACTGC AGTTCCTGCTGGCCAGTTTGTTCCTGGAATTATGATAGGCTCCACGTACGGGCGCCTGGTTGGCATGTTTGTTGTTAATTTTTACAAGGTCAACGTTGAG GAGGGAACATATGCACTGTTGGGAGCAGCTTCTTTTCTTGGAGGTTCAATGCGAATGACTGTCTCTTTATGTGTAATTATGGTTGAGATCACAAACAACT TGAAACTTTTACCTTTAATCATGCTTGTTCTCCTGATATCAAAGGCTGTTGGTGATGCATTCAATGAAGGTCTTTATGAACAACAAGCACGATTGAGAGG AATTCCACTGTTGGAATCTAGACCTAAATACCAAATGAGAAACATGAAGGCAAAGGAAGCTTGTGGAAATCAGAAGGTTGTCTCCTTTCCCCGTATTGTT AAGGTTGCAGATGTCATTTCTATTTTGCAGAGCAACATACACAATGGCTTTCCTGTGATTGATCACACGAGAAATGGGGAAACACTTGTAATTGGACTTG TGCTTCGCAGTCATTTGCTAGTCCTTCTCCAATCCAAGGTGGATTTTCAGCATAGTCCTTTACCATGTGATCCAGCAGGTGTATCGAAATCAATCAGGCA CAACTTCAGTGAGTTTGTGAAACCTGTTTCCAGTAAAGGAATTTCTATAGAGGATATTCATTTAAGTTCAGATGACTTGGAAATGTACATTGATCTTGCC CCATTTTTGAACCCCTCTCCATACGTTGTCCCTGAAGATATGTCTTTAACAAAGGTATATAATCTTTTCCGACAACTAGGGTTGAGGCATATATTTGTTG TTCCTCGTGCATCTCGGGTAGTTGGAATGATTACAAGAAAGGACTTGCTGATTGAGGATAGAGAGGATTCAGCTAATGTGGAGCTCCAATCAACTAGTGT AAGAGGGCACCGTCAATATAGGATGATCTCGAGGGATGTGGATGTGGAGCGCCCACTTCTTAATGGTCTTCTAGTTCAAGATCATATGCTTGGTTGA
AA sequence Show only first row Show all	>Potri.010G090100.1 pacid=42799056 polypeptide=Potri.010G090100.1.p locus=Potri.010G090100 ID=Potri.010G090100.1.v4.1 annot-version=v4.1 MLSNQLHNGMETAKLLWSRIPSSEDGEVDGVSMLRTSNGNTAESLDYEVIENQAYRYEQAQRGKLYVGYQVVVKWFLALLIGIGTGLAAVFINISVENFA GWKFSLTFSIIQRSYFAGFVIYVLINLVLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGLDIPGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACI ASLLGQGGSTKYHLSLRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGG FIIWDTSDGQEDYSFGELLPMAVIGVIGGLLGALFNQLTLHITYWRRNYLHKNGNRVKIIEACLISVITSAISFGLPLLRKCNPCPESDPDSGIECPRPP GMYGNYVNFYCGKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKVNVE EGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEQQARLRGIPLLESRPKYQMRNMKAKEACGNQKVVSFPRIV KVADVISILQSNIHNGFPVIDHTRNGETLVIGLVLRSHLLVLLQSKVDFQHSPLPCDPAGVSKSIRHNFSEFVKPVSSKGISIEDIHLSSDDLEMYIDLA PFLNPSPYVVPEDMSLTKVYNLFRQLGLRHIFVVPRASRVVGMITRKDLLIEDREDSANVELQSTSVRGHRQYRMISRDVDVERPLLNGLLVQDHMLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Potri.010G090100 [exp]	0	1
AT2G32970			unknown protein		Potri.014G158200 [exp]	8.66	0.7418
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.008G149700 [exp]	8.83	0.7769
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.004G210400 [exp]	30.38	0.7584
AT2G32970			unknown protein		Potri.002G224900 [exp]	37.62	0.7281
AT3G62260			Protein phosphatase 2C family ...		Potri.002G190400 [exp]	39.59	0.7761
AT1G67300			Major facilitator superfamily ...		Potri.018G083200 [exp]	43.24	0.7171
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.005G045100 [exp]	45.17	0.6920	NHX2.1
AT2G26800			Aldolase superfamily protein (...		Potri.009G068600 [exp]	48.49	0.6821
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.008G077300 [exp]	62.03	0.7219
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.013G051400 [exp]	65.49	0.6984	SEC.1

Compare expression of checked genes

Potri.010G090100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.