Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LACS6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05970 1078 / 0 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT5G27600 1074 / 0 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT1G49430 471 / 1e-157 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G23850 455 / 1e-151 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 448 / 1e-148 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 446 / 3e-148 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G64400 442 / 2e-146 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G77590 358 / 8e-114 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 354 / 6e-112 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT4G14070 189 / 6e-51 AAE15 acyl-activating enzyme 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021300 [exp] 1083 / 0 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.003G139700 [exp] 475 / 2e-159 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 469 / 5e-157 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.001G091900 [exp] 468 / 2e-156 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.002G192400 [exp] 412 / 5e-135 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169400 [exp] 344 / 7e-108 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 337 / 2e-105 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.002G084100 [exp] 331 / 3e-103 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 316 / 5e-99 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002454 [exp] 1128 / 0 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 1125 / 0 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 1050 / 0 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 1044 / 0 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10021021 [exp] 471 / 1e-157 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 467 / 4e-155 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 463 / 1e-154 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10001830 [exp] 426 / 8e-141 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10032840 [exp] 417 / 9e-137 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10023089 [exp] 397 / 4e-128 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.010G090200.1 pacid=42797180 polypeptide=Potri.010G090200.1.p locus=Potri.010G090200 ID=Potri.010G090200.1.v4.1 annot-version=v4.1 ATGGACTCGGCGATGACAGCTCCCGATACAGCTCAACGTCGCATTAAAGCTATTCACAGCCACCTCATCACCGCCGCTGCCCATGATGATTCTCCGCCCC AACTCCGTCACAATCCCACCGCTGGAGAGTTCTTCTCTGAGCAGGGGTACAGCGTTGTGCTTCCAGAGAAATTGCAAACAGGAAAGTGGAATGTGTACAG GTCTGCTCGCACCCCTTTAAAGCTCGTGAGTAGATTTCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGCGCGCTCGGTTGAAACTTTCCGG GACTACAAATATCTGGGCACGCGAATTCGTGTTGATGGAACAGTTGGAGACTACAAATGGATGACGTTCGGAGAAGCAGGTACTGCACGAACTGAGATAG GTTCTGGCTTAATATACCATGGAATACCTAAGGGATCTACTATTGGAATATATTTTATCAACAGGCCAGAATGGATGATTGTTGACCATGCGTGCTCTGC ATACTCTTACATATCCGTACCTTTATATGACACACTCGGTCCTGATGCTGTCAAGTATATTGTAAATCATGCTGTTGTACATGCTATATTTTGTGTGCCT CAAACATTGAATATGTTATTGAGTTTCTTGTCTGAGATTCCATCTGCACGTCTAATTGTGGTGGTTGGAGGAATAGATGATCAAATGCCATCTCTTCCAT CGTCAACTGGAGTTCAGGTTGTGACATATTCAAAACTGCTGAGTCAGGGTCGCAGTAGCCTGCAGCCCTTTCACCCGCCAAAGCCTGAGGATATTGCTAC CATTTGCTACACAAGTGGTACAACTGGAACACCAAAGGGAGTTGTATTGACCCATGGAAACTTTATTGCAAGCGTTGCTGGGATCTCGCTTTCTACTTCA TACAGCACATCAGATATTTTCATTTCATATTTGCCTTTGGCGCACATTTATGAACGGGTAAACCAGGTCATGACGGTTTATTGTGGAGTTGCTGTTGGAT TCTATCAGGGGGATAATATGAAACTAATGGATGATATGGCTGCTCTACGACCCACTATATTCTGCAGTGTTCCTCGGCTCTACAATAGAATATATGCAGG TATTATGAATGCTGTAAAGGCATCTGGTGGGTTAAGGGAGAGGTTATTCAATGCTGCTTATAATGCTAAGAAGCAAGCACTACTGAATGGCAAGAATCCA TCTCCAATGTGGGACAGGCTGGTGTTCAATAAGATTAAGGATAGACTTGGAGGGCGAGTTCGTTTAATTGTGTCAGGTGCTTCACCGCTGTCTCCTGATG TGTTGGAGTTTTTGAGGATCTGTTTTGGTGGGCGGATAATTGAAGGGTATGGAATGACTGAGACGACTTCTCCTATATCTTCCATGGATGAGGGTGACAG CCTCAATGGTCATGTTGGTTCTCCTAGTCCATCTTGTGAAGTAAAGCTTGTGGATGTTCCAGAAATGAACTACACATCTGATGATAAGCCATATCCTCGT GGTGAAATCTGTATAAGGGGTCCAATTGTTTTCCAAGGCTATTACAAAGATGAAGAACAGACGAGAGAAGTAATCAATGAAGATGGATGGTTTCATTCTG GGGATATAGGATTATGGCTACCTGGAGGCCGTCTAAAGATTATTGATAGAAAGAAGAACATTTTTAAGCTGGCACAAGGAGAGTACATAGCTCCGGAGAA AATTGAGAATGTTTATGCTAAATGCAAGTTTATTGCCCAGTGCTTTGTCTATGGGGACAGCCTAAATTCTTCTTTGGTAGCTGTTGTTTCAGTAGACCAT GATGTGTTGAAAGCATGGGCTGCTTCTGAAGGCAATAAGTATGAAAATTTAGCACAACTGTGCAATGATCCTAGAGTTAGGGCTGCTATACTTGCAGACA TGGATGCTGTCGGAAGGGAAGCTCAGCTGCGAGGTTTTGAATTTGTAAAAGCTGTGACACTGGTGCTAGAACAATTTACAGTGGAAAATGATCTTCTGAC CCCAACATTTAAGATTAAGAGACCTCAGGCAAAGGCATACTACGAGAAAGCAATATCAAATATGTATGCAGAACTGGCTGCATCTGATCCCTCTTCTAAG AAGGTGCTGTGA
AA sequence Show only first row Show all	>Potri.010G090200.1 pacid=42797180 polypeptide=Potri.010G090200.1.p locus=Potri.010G090200 ID=Potri.010G090200.1.v4.1 annot-version=v4.1 MDSAMTAPDTAQRRIKAIHSHLITAAAHDDSPPQLRHNPTAGEFFSEQGYSVVLPEKLQTGKWNVYRSARTPLKLVSRFPDHPEIGTLHDNFARSVETFR DYKYLGTRIRVDGTVGDYKWMTFGEAGTARTEIGSGLIYHGIPKGSTIGIYFINRPEWMIVDHACSAYSYISVPLYDTLGPDAVKYIVNHAVVHAIFCVP QTLNMLLSFLSEIPSARLIVVVGGIDDQMPSLPSSTGVQVVTYSKLLSQGRSSLQPFHPPKPEDIATICYTSGTTGTPKGVVLTHGNFIASVAGISLSTS YSTSDIFISYLPLAHIYERVNQVMTVYCGVAVGFYQGDNMKLMDDMAALRPTIFCSVPRLYNRIYAGIMNAVKASGGLRERLFNAAYNAKKQALLNGKNP SPMWDRLVFNKIKDRLGGRVRLIVSGASPLSPDVLEFLRICFGGRIIEGYGMTETTSPISSMDEGDSLNGHVGSPSPSCEVKLVDVPEMNYTSDDKPYPR GEICIRGPIVFQGYYKDEEQTREVINEDGWFHSGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSLNSSLVAVVSVDH DVLKAWAASEGNKYENLAQLCNDPRVRAAILADMDAVGREAQLRGFEFVKAVTLVLEQFTVENDLLTPTFKIKRPQAKAYYEKAISNMYAELAASDPSSK KVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	0	1	Pt-LACS6.1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.012G112000 [exp]	1.00	0.9400	Pt-ERD1.4
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G259400 [exp]	3.46	0.9094
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003100 [exp]	3.46	0.9209
AT5G18130			unknown protein		Potri.019G035600 [exp]	4.00	0.9289
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.002G205500 [exp]	5.38	0.8872	MRP4.1
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.005G040600 [exp]	9.74	0.8908
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.018G088300 [exp]	10.95	0.8740	HXK1.1
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.014G107200 [exp]	11.83	0.9164
AT3G16510			Calcium-dependent lipid-bindin...		Potri.001G070400 [exp]	12.00	0.9037
AT5G62680			Major facilitator superfamily ...		Potri.012G071400 [exp]	12.12	0.8787

Compare expression of checked genes

Potri.010G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.