Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26230 150 / 5e-42 MAKR1 membrane-associated kinase regulator 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G027500 [exp] 44 / 0.0001 AT5G52870 90 / 4e-20 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021928 [exp] 182 / 1e-54 AT5G26230 183 / 2e-55 membrane-associated kinase regulator 1, unknown protein Lus10041214 [exp] 123 / 9e-34 AT5G26230 120 / 2e-33 membrane-associated kinase regulator 1, unknown protein Lus10040336 [exp] 47 / 2e-05 AT2G39370 174 / 8e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10023461 [exp] 46 / 2e-05 AT2G39370 177 / 4e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G090500.1 pacid=42797821 polypeptide=Potri.010G090500.1.p locus=Potri.010G090500 ID=Potri.010G090500.1.v4.1 annot-version=v4.1 ATGGGGAAGAGAAGCGAGAAAGTTTCGACAAGATCGTCTCAAACTCTACCACCGTCACCCTCACATTCTTTCTCTTCCTCTTCCTCCTCAGACTTTGAGT TCACAATCTCTTTATCTCCACGCAAATCCTCAACAACTCTTTGCCCAGCTGATGAGCTCTTCTACAAGGGCCAGCTCTTGCCTCTCCATCTCTCTCCACG CATCTCCATGGTCCGTACTCTTCTCTTAGCTTCATCAAGCACCTCTTCCTCCTCTGACACCACCACCACCGCCTCCCGTGACTCCACTGGCAGCTCCAAT GACTCTACTTCATCCTTTACGAGTGATATGGTCTTGCTAGGAGATTGTGACTCGTCAAGACCTAGTTCAGTCACCGAAGATGATGAGTTCAGGAGGCTTA ATAACAACCACCCTCATTTTCAAAACGATGTTCACTTGAGTTCACAGATCAATAAGAAGGGTAGCAATAAGTACTTCTCTCTATCAAGATTCTCTTCTGT TTTCAAGAAAGAGAACAAGAGCCGTGAAAATGATAACGTACCCGGTTCTTCAGTGAAAAGAATAAGCGTTACAGCAAAAGAGGTTATAAGGAAGTACTTC AAGAAAGTGAAGCCATTGTATGAGAAACTATCTCAGAAACAACAGCAAAAAATGGGAGGCCATGTGCATTCAATATTGCCGACATCAACAGCAATTAATA CAACTGTCACTCTGTCAACGAAATTGGAGAGATCTATGAAAGATATTGATGATGTGATCTCTGGCAAGGATGCGAGAAAGGAAAGTACTGCTAATACTGG AGTATTTTCTCATTCTTTCTCGGGAAATTTGAGGTACCCAAGAAGGAGAAGCTGCGTTTCTAGCTGTCCATCCTCAATGCGGTCATCTCCTAGTCACTCT GGTGTGCTCAGTAAAAACGGGTTTATGGGTGGTTCAGCAGCTGGTCCAACAAGTAGGATTGCTGCATCTGCAGGTGGTGGCATGTGCTACGGAGACGCAT CATCAATGGAGGAGCTGCAGAGTGCTATACAAGGTGCGATTGCTCATTGCAAGAACTCCATGATGCAAAACAAGACCATGATCAATAATGAAATCTAA
AA sequence Show only first row Show all	>Potri.010G090500.1 pacid=42797821 polypeptide=Potri.010G090500.1.p locus=Potri.010G090500 ID=Potri.010G090500.1.v4.1 annot-version=v4.1 MGKRSEKVSTRSSQTLPPSPSHSFSSSSSSDFEFTISLSPRKSSTTLCPADELFYKGQLLPLHLSPRISMVRTLLLASSSTSSSSDTTTTASRDSTGSSN DSTSSFTSDMVLLGDCDSSRPSSVTEDDEFRRLNNNHPHFQNDVHLSSQINKKGSNKYFSLSRFSSVFKKENKSRENDNVPGSSVKRISVTAKEVIRKYF KKVKPLYEKLSQKQQQKMGGHVHSILPTSTAINTTVTLSTKLERSMKDIDDVISGKDARKESTANTGVFSHSFSGNLRYPRRRSCVSSCPSSMRSSPSHS GVLSKNGFMGGSAAGPTSRIAASAGGGMCYGDASSMEELQSAIQGAIAHCKNSMMQNKTMINNEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	0	1
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	3.87	0.9188	Pt-LACS2.2
AT5G38610			Plant invertase/pectin methyle...		Potri.003G086600 [exp]	6.48	0.9242
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	8.12	0.9224
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072741 [exp]	8.30	0.9326
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	9.48	0.9110
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	10.95	0.9050
AT3G06868			unknown protein		Potri.008G220700 [exp]	12.12	0.8948
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.018G036700 [exp]	18.33	0.9053
					Potri.004G213900 [exp]	23.32	0.9222
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152900 [exp]	30.39	0.9126

Compare expression of checked genes

Potri.010G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.