Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19330 962 / 0 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 708 / 0 ABAP1 ARMADILLO BTB protein 1 (.1) AT1G23030 60 / 4e-09 PUB11 ARM repeat superfamily protein (.1) AT4G02150 59 / 7e-09 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT3G46510 58 / 1e-08 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT4G16143 57 / 2e-08 IMPA-2 importin alpha isoform 2 (.1.2) AT2G23140 57 / 3e-08 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 56 / 8e-08 ARM repeat superfamily protein (.1) AT3G06720 55 / 2e-07 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT3G06190 54 / 3e-07 ATBPM2 BTB-POZ and MATH domain 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150100 [exp] 1145 / 0 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 895 / 0 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 874 / 0 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G001400 [exp] 68 / 1e-11 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.008G214100 [exp] 64 / 1e-10 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.007G051000 [exp] 63 / 5e-10 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G009900 [exp] 62 / 8e-10 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.006G015100 [exp] 60 / 3e-09 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.014G124200 [exp] 59 / 1e-08 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034070 [exp] 994 / 0 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 981 / 0 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 716 / 0 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 714 / 0 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10027086 [exp] 99 / 4e-21 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039047 [exp] 66 / 4e-11 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10016016 [exp] 62 / 1e-09 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10010499 [exp] 62 / 1e-09 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10042337 [exp] 61 / 2e-09 AT5G41310 96 / 1e-21 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10036452 [exp] 60 / 3e-09 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.010G090900.7 pacid=42797847 polypeptide=Potri.010G090900.7.p locus=Potri.010G090900 ID=Potri.010G090900.7.v4.1 annot-version=v4.1 ATGGAGCTGAAGAAGCACCAAGATCAGAGGCTCCCTGAGAGGAAGGGGCAAAAAAGGAAACTTGAAGAGGAAATCGAGGAGGAGCAGAGAGAGATCTCGG CGGTGGAGGAGGCCGCTGCAGCTCCCTACGGCGAGGCACGGAAAGTGATATTGAACGAGGTTTATGCTCAGGTTAATATCCTCAACTCTACCTTCTCATG GGACGAAGCTCATCGCGCCACCGCCAAACGCGCTACTCACGTCCTCGCAGAACTCGCAAAAAACGAGGAAGTAGTGAACTTGATTGTTGAAGGAGGTGCA GTTCCTGCACTGGTTAAGCATCTTCAAGTACCACCGTCAAGTGAAATTGATCATGATAATTCGAAGCCGTTTGAGCATGAAGTCGAGAAAGGAAGTGCTT TTGCGCTTGGGCTGCTTGCAGTCAAGCCAGAGCATCAGCAACTCATTGTTGACGCTGGGGCTTTGTCACATCTTGTGAGCTTGTTGAAGAGGCAAAGGGA TGTTCATAAGGATGGTTCTGATTCTCGAGCTGTGAATAGTGTTATTAGGAGGGCTGCTGATGCTATCACCAATCTTGCTCATGAGAACAGCAGCATTAAA ACTCGTGTTAGGATGGAAGGTGGGATTCCTCCTCTGGTTGAGTTGCTTGAATTCACTGACACAAAGGTGCAAAGAGCAGCTGCTGGGGCACTTAGAACCC TGGCTTTTAAGAATGATGAGAACAAGAATCAGATTGTTGAATGCAATGCTCTTCCCGCCCTTATATTAATGTTACGATCTGATGCTGCTGCCATACACTA TGAAGCAGTAGGTGTGATTGGAAATCTGGTACATTCATCCCCAAGCATAAAAAGAGAAGTTCTTGCTGCTGGGGCTCTCCAACCTGTTATTGGTTTACTT AGCTCCTGCTGCTCTGAGAGCCAAAGGGAGGCTGCTTTATTACTTGGACAATTTGCAGCAACAGATTCAGATTGCAAGGTGCACATTGTACAAAGGGGTG CTGTTCAACCTTTGATCGAGATGCTCCAGTCTCCCGATGTCCAACTGAGAGAAATGTCAGCATTTGCATTGGGGAGGTTGGCACAGGTTAAAAAAATTAC TCAATTTCAGGACACACACAACCAAGCTGGTATAGCCCACAATGGTGGTCTAGTGCCATTACTGAAGCTTCTGGATTCAAAGAATGGATCTCTTCAACAT AATGCTGCATTTTCTCTGTATGGCCTTGCAGATAATGAGGACAATGTCTCTGATTTTATCAGTGTGGGAGGTGTTCAGAAGCTGCAGGATGGAGAGTTTA GTGTTCAGGCAACAAAAGATTGTGTAGCCAAGACTTTGAAAAGACTGGAGGAGAAGATTCATGGAAGAGTTTTAAACCACTTATTGTATCTAATGCGTGT AGCGGAGAAGGCTGTCCAACGACGTGTTGCTCTAGCTCTTGCACATCTTTGTTCCCCAGATGACCAGAGAGCAATATTCATTAATAATAGTGGATTGGAT TTACTCCTTGGGCTTCTTGGCTCTTCAAGCCCGAAGCAACAACTTGATGGAGCCATAGCTCTTTACAGGTTGGCCAACAAAGCAACGATTCTTTCTCCTG TGGATGCGGCTCCTCCTTCTCCAACACCGCAGGTGTATTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCGGACGTCACCTTTCTCGTCGAAGGTAG ACGATTCTATGCCCACAGAATTTGCCTGCTTGCTTCCTCAGATGCATTTCGGGCAATGTTTGATGGTGGTTACCGGGAAAAGGATGCAAGGGACATTGAA ATTCCAAATATCAGATGGGAGGTTTTTGAGTTGATGATGAGATTCATATACACAGGTTCAGTAGATGTTACATTAGGTATCGCACAGGATCTCCTCAGGG CTGCTGACCAGTTGAAAGCCGATGTCTGA
AA sequence Show only first row Show all	>Potri.010G090900.7 pacid=42797847 polypeptide=Potri.010G090900.7.p locus=Potri.010G090900 ID=Potri.010G090900.7.v4.1 annot-version=v4.1 MELKKHQDQRLPERKGQKRKLEEEIEEEQREISAVEEAAAAPYGEARKVILNEVYAQVNILNSTFSWDEAHRATAKRATHVLAELAKNEEVVNLIVEGGA VPALVKHLQVPPSSEIDHDNSKPFEHEVEKGSAFALGLLAVKPEHQQLIVDAGALSHLVSLLKRQRDVHKDGSDSRAVNSVIRRAADAITNLAHENSSIK TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPALILMLRSDAAAIHYEAVGVIGNLVHSSPSIKREVLAAGALQPVIGLL SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQVKKITQFQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQH NAAFSLYGLADNEDNVSDFISVGGVQKLQDGEFSVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKAVQRRVALALAHLCSPDDQRAIFINNSGLD LLLGLLGSSSPKQQLDGAIALYRLANKATILSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIE IPNIRWEVFELMMRFIYTGSVDVTLGIAQDLLRAADQLKADV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.010G090900 [exp]	0	1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Potri.010G072900 [exp]	10.48	0.6255
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Potri.009G027600 [exp]	11.83	0.5840	MBD906
AT3G15750			Essential protein Yae1, N-term...		Potri.003G201500 [exp]	15.49	0.6170
AT3G17300		EMB2786	unknown protein		Potri.008G100400 [exp]	17.14	0.6420
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Potri.006G121801 [exp]	20.59	0.6697
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Potri.014G077600 [exp]	21.28	0.6804
AT5G27860			unknown protein		Potri.005G023000 [exp]	21.33	0.6567
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.002G119400 [exp]	21.81	0.6940
AT5G19473			RPM1-interacting protein 4 (RI...		Potri.009G067600 [exp]	31.74	0.6466
AT3G27640			Transducin/WD40 repeat-like su...		Potri.001G345400 [exp]	35.00	0.6649

Compare expression of checked genes

Potri.010G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.