Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RANGAP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19320 645 / 0 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G63130 578 / 0 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT3G06000 137 / 4e-37 RNI-like superfamily protein (.1) AT1G10510 87 / 1e-17 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT1G47200 66 / 2e-12 WPP2 WPP domain protein 2 (.1) AT5G43070 64 / 9e-12 WPP1 WPP domain protein 1 (.1) AT5G27940 40 / 0.0007 WPP3 WPP domain protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209600 [exp] 620 / 0 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.002G052900 [exp] 610 / 0 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.008G193700 [exp] 86 / 3e-17 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.002G122000 [exp] 65 / 4e-12 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1) Potri.014G021900 [exp] 64 / 8e-12 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.001G361200 [exp] 45 / 0.0002 AT5G55540 1900 / 0.0 LOPPED 1, tornado 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034066 [exp] 656 / 0 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10010523 [exp] 648 / 0 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10014670 [exp] 617 / 0 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10006930 [exp] 612 / 0 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10030658 [exp] 87 / 8e-18 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030829 [exp] 86 / 2e-17 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10010235 [exp] 61 / 1e-10 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10009747 [exp] 60 / 2e-10 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1) Lus10042643 [exp] 58 / 8e-10 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13943 [poplar] [flax] WPP WPP domain
Representative CDS sequence Show only first row Show all	>Potri.010G091100.3 pacid=42799058 polypeptide=Potri.010G091100.3.p locus=Potri.010G091100 ID=Potri.010G091100.3.v4.1 annot-version=v4.1 ATGTCTGCAGGTTTCTCTGAAATGGATGCCACTGAGTCAAAGTCACAGCCCCGACCATTTTCAATAAAGCTGTGGCCCCCTAGTCAGAACACAAGGCAAA TGCTTGTGGTTCGTGTTACTGACAATCTCACTACTAAGTCGATTTTCACCCAGAAATATGGCAGTCTGAGCAAGGAGGAGGCTGAGGAGAATGCAAAAAA AATCGAAGATGGTGCTTTTTCTACTGCAAATGAACACTATGAAAAGGAGCCAGATGGTGACGGAAGTTCTGCAGTACAGCTTTATGCCAAGGAATGCAGC AAGCAAATCTTGGAAGTTCTCAAAAGAGGCCCTTCTAGTAAGGACGACAAAGAAGTTTTGGTGTCCGAAGAAGTTAGTGCACCCCGTGACACCGTGTTTG ATATATCTAAAGGTGCGCGATCCTTTATTGAGGAGAAGGAGGCCGAGGAAACACTTGAGCCATTAAAAGAGCCAGGAAATTCTTACACTAAAATATGCTT TAGCAATAGAAGCTTTGGTCTAGAAGCAGCTCGTGTTGCTGAACCCATTCTGGCCTCCATTAAGAATCAGCTGAAGGAAGTTGACCTGTCAGATTTTATT GCTGGAAGACCAGAGGCAGAAGCACTTGAAGTAATGAATATATTCTCCACTGCTTTGGAAGGTAGCATTCTCAAGTCCTTGAACCTTTCAAATAATGCCT TGGGTGAGAAGGGTGTTAGGGCTTTTGGGGCACTCCTTAGGTCACAGAGTTGCTTAGAGGAGCTCTACTTAATGAACAATGGCATCTCAGAGGAAGCTGC TGAAGCGGTCTGTGAATTAATTCCTTTGACAGAGAAGCTTAGGGTTCTTCAGTTTCATAACAATATGACTGGAGACAAAGGAGCACTTGCCATCTCTAAG GTTGTGAAGCGCTCTCCCTTACTGGAAGATTTTCGATGTTCCTCCACAAGGGTAGGCTCTGAAGGAGGAGTTGCCTTATCAGAAGCTCTTGACACTTGCA CCCATTTGAAGAAGCTTGATTTGCGAGACAATATGTTTGGAGTGGAAGCAGGAGTTGCTCTGAGTAAAGCTCTTTCCAAATATGCTGGTTTGACAGAAGT TTATTTGAGCTATCTTAATTTGGAAGATGAAGGTGCCATGGCTATAGCTAGAGCTCTAAAGGAATCAGCTCCCTCACTGGAAGTCCTGGATATAGCTGGA AATGACATAACAGCTGAAGCTGCTCCTATTGTAGCTGCTTGTATAGCAGAGAAGCAACATCTTACCAAGTTGAACTTGGCTGAAAATGAACTCAAGGATG AAGGTGCTATCCAGATCAGTAAGGTCTTGGAAGAAGGCCATCTCCAGCTGAAGGAAGTTGATATGAGCATCAATTCTATACGAAGGGCTGGGGCTCGAGT CTTGGCAAGGGTAGTGGTGCAGAAGCCTGAGTTTAAATTTCTGAATATTGATGGGAATTTTATTTCAGATGAAGGCATTGATGAGGTGAAGGAAATGTTT GAGAAATTCCCAGATAGGCTTGGATCCTTTGATGAGAATGATCCTGAAGGAGGTGATGATGAGGAAGAGTCTGGAGAAGGTGAAGGTGATGAGCATGAGT TGGAAACGAAACTGGAGAAACTTGAAGTTAACAAAGAGGAATAA
AA sequence Show only first row Show all	>Potri.010G091100.3 pacid=42799058 polypeptide=Potri.010G091100.3.p locus=Potri.010G091100 ID=Potri.010G091100.3.v4.1 annot-version=v4.1 MSAGFSEMDATESKSQPRPFSIKLWPPSQNTRQMLVVRVTDNLTTKSIFTQKYGSLSKEEAEENAKKIEDGAFSTANEHYEKEPDGDGSSAVQLYAKECS KQILEVLKRGPSSKDDKEVLVSEEVSAPRDTVFDISKGARSFIEEKEAEETLEPLKEPGNSYTKICFSNRSFGLEAARVAEPILASIKNQLKEVDLSDFI AGRPEAEALEVMNIFSTALEGSILKSLNLSNNALGEKGVRAFGALLRSQSCLEELYLMNNGISEEAAEAVCELIPLTEKLRVLQFHNNMTGDKGALAISK VVKRSPLLEDFRCSSTRVGSEGGVALSEALDTCTHLKKLDLRDNMFGVEAGVALSKALSKYAGLTEVYLSYLNLEDEGAMAIARALKESAPSLEVLDIAG NDITAEAAPIVAACIAEKQHLTKLNLAENELKDEGAIQISKVLEEGHLQLKEVDMSINSIRRAGARVLARVVVQKPEFKFLNIDGNFISDEGIDEVKEMF EKFPDRLGSFDENDPEGGDDEEESGEGEGDEHELETKLEKLEVNKEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Potri.010G091100 [exp]	0	1	Pt-RANGAP2.1
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Potri.012G111200 [exp]	3.31	0.9224
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	4.58	0.9456
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	7.48	0.9369
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.001G147900 [exp]	8.30	0.9344
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.001G159700 [exp]	10.95	0.9299
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	13.22	0.9312
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	13.60	0.9323
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	13.63	0.9314
AT3G10080			RmlC-like cupins superfamily p...		Potri.010G238200 [exp]	14.96	0.8661
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	16.61	0.9325

Compare expression of checked genes

Potri.010G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.