Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06010 1407 / 0 ATCHR12 Homeotic gene regulator (.1) AT5G19310 1291 / 0 Homeotic gene regulator (.1) AT2G28290 530 / 5e-161 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G18620 448 / 2e-139 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 446 / 7e-139 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT2G46020 447 / 6e-133 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT5G66750 391 / 4e-121 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G13370 401 / 6e-118 CHR5 chromatin remodeling 5 (.1) AT2G25170 340 / 5e-98 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G44980 327 / 7e-97 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149900 [exp] 1927 / 0 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G019150 [exp] 547 / 1e-166 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 545 / 6e-166 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G021400 [exp] 447 / 8e-139 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 444 / 9e-138 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.002G160900 [exp] 439 / 2e-130 AT2G46020 2519 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.014G086500 [exp] 436 / 4e-129 AT2G46020 2483 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.019G129900 [exp] 404 / 3e-126 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 394 / 2e-122 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034064 [exp] 1446 / 0 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 1344 / 0 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10012798 [exp] 510 / 6e-154 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10036371 [exp] 454 / 4e-135 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10033967 [exp] 442 / 2e-132 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10041735 [exp] 398 / 3e-123 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10009711 [exp] 406 / 3e-120 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 405 / 3e-119 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10024019 [exp] 361 / 3e-109 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041019 [exp] 339 / 3e-97 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF14619 [poplar] [flax] SnAC Snf2-ATP coupling, chromatin remodelling complex
Representative CDS sequence Show only first row Show all	>Potri.010G091200.2 pacid=42798393 polypeptide=Potri.010G091200.2.p locus=Potri.010G091200 ID=Potri.010G091200.2.v4.1 annot-version=v4.1 ATGGTTGCTCAGCTTGAGCACCACCTTCAACAAGACTCTCCAGCCGCCTCCTTCTCCTCCTCACTAGAAGACCATGTTCAGAAGACAAAGTCTCTGATCT CCGCCCTCAATTTTGTCTCTCGTAATCTCCCCCTCCCTCTTGATCTTTTCAACACCGTCTCTTCAATCTATTCAGATGTCGGTAATGCTGATTTTGACGG TGGGGCCCAAGAGAGAAGCCAATTGCAGGGTAACCCTGGGATTTCCATCAGAACTGATTTGATGACTGGATTTGAGGATGCACTATCAAAGCAAAGGCTA AATTGCATGTCGGGTTTTTCTCTGGCAGAATTGAGGGAAAATCGATATCAAAGCCACATCCTGCATCGCTTGAATGAACTCGAAGAACTGCCTTCAACCA GAGGTGAAGACCTGCAAATGAAATGTTTACTCGAACTTCATGGACTCAAGCTAGCAGAATTGCAAAGCAAAGTTCAATCTGAAGTGAGTTCAGAGTACTG GCTTCGTTTGAATTGTATGTTTCCTGACAAGCAACTTTTTGATTGGGGTATGATGCGGTTGCCTCGTCCTCTATACGGTATAGGGGATGCTTTTGCCATG GAAGCTGATGATCAATTCCGAAAGAAACGAGATGCTGAGAGGCTGTCAAGGTTAGAAGATGAAGAAAGGAACCATGTGGAGACTAGAAAAAGAAAATTTT TTACAGAAATACTTAACGCTGTCAGAGAGTTCCAATTGCAAGTTCAGGCTACTCATAAAAGGAGAAAGCAAAGGAATGATGGGATCCAGGCATGGCATGG AAGGCAAAGGCAGCGTGCTACACGGGCAGAGAAACTGAGGCTCCAAGCCCTGAAGGCTGATGATCAAGAAGCATATATGAGGTTAGTAAAGGAGAGCAAG AATGAACGACTTACAATGCTTCTTGAAGAAACAAATAACCTACTTGCTAACTTGGGAGCTGCGGTCAAGCGCCAAAAAGATTCCAAACATTCAGATGGCA TTGAACCTTTAAGAGACTCAGAAGCTGATTCTCCGGAGTTGGATGCTTCAAGGAATGAAAGTGAACTGGATACATATCCTGAGGAAGATGTCATCATTGA TTCTAATCTTAATGATGATACTGGTGATTTGCTTGAAGGCCAACGACAATACAACTCAGCCATTCATTCGATTCAGGAGATGGTAACTGAGCAGCCATAC ATACTTAAAGGTGGACAATTAAGATCATACCAGTTAGAAGGGCTTCAATGGATGCTGTCTTTATTCAACAACAATTTAAATGGAATTTTAGCTGATGAAA TGGGGTTGGGGAAAACAATACAAACAATTTCATTGATAGCATATCTCAAGGAGAAAAAAGGTGTGTGTGGGCCACACCTGATAGTTGCTCCAAAGGCTGT TCTACCGAATTGGATCAATGAATTCTCAACATGGATTTCAGAGGCTGAAATTAAAGCTTTTCTTTATGATGGATGTCTAGAGGAGAGAAAGGCAATAAGG GAACAGTTATCAAGAGAGGGGAATCTTCAGGTGTTGATCACGCATTACGATCTAATCATGAGAGATAAAGCATTTTTGAAAAAAATTCAATGGCAGTACA TGATTGTTGATGAAGGTCATCGACTAAAGAATCATGAGTGTGCTCTGGCAAAGACTATTGGAGGCTATCAGATGAAGCGCAGACTTTTGTTGACTGGGAC TCCAATACAGAACAGCTTGCAGGAACTCTGGTCCTTGCTTAATTTTCTCCTCCCGCATATTTTTAATTCTGAGGATAAATTTGAAGAGTGGTTTAATGCT CCCTTCGCTGATCGGGGTGAAGTTTCTCTCACCGATGAAGAACAACTATTGATTATTCGTCGTTTGCATAATGTTATAAGGCCATTCATATTGAGGAGGA AAAAAAATGAGGTGGAGAAATATCTTCCTGGGAAAACTCAGGTTTTACTAAAATGTGATTTGTCAGCATGGCAAAAAGTTTATTACCAGCAAGTTACAGA GATGGGCAGAGTTGGGCTGCATACTGGATCTGGAAAATCTAAGAGTCTGCAGAATCTGACGATGCAGCTCAGGAAGTGTTGCAACCACCCATATCTTTTT GTTGGAGATTATAACATGTGGAGGAAGGACGAAATCATGAGAGCATCAGGGAAGTTTGAACTACTTGACCGCCTTCTCCCAAAACTTCATGCAACTGATC ATAGAGTCCTGCTTTTCTCACAAATGACTCGTCTTATGGACATTCTTGAAATTTATTTGCAACTTCATGATTACAAGTATCTTAGACTTGATGGCTCAAC TAAAACTGAGGAAAGAGGAACATTACTAAAGAAATTTAATGCTCCAGACTCTCCTTACTTCATGTTCCTTTTGAGCACTCGTGCTGGAGGTCTCGGTTTG AATTTACAAACAGCAGATACTGTAATAATTTTTGATAGTGACTGGAACCCCCAAATGGACCAGCAGGCAGAGGATCGTGCCCATCGTATTGGACAAAAGA AGGAAGTCAGAGTTTTTGTTCTGGTTAGTGTTGGATCGGTTGAAGAGGTGATCTTGGAGCGTGCGAAACAGAAGAAGGGCATTGATGCCAAGGTCATCCA GGCTGGACTTTTTAATACAACGTCCACAGCTCAGGACAGAAAAGACATGTTAGAGGAGATTATGCATAGAGGAACTAGCTCACTCGGAACAGATGTCCCA AGTGAGAGAGAGATCAACCGCCTCGCAGCCCGTTCTCAAGAAGAGTTTCGGATTTTTGAGGATATGGACAAGGATAGAAGAAAAAAGGAGGATTACAGAT CTCGTCTCATGGAAGAGCATGAGGTACCTGAATGGGCATATCAAGCACCTGATAACAAGGAAGATAAGGCCAAAGGTTTTGAGCAGAATAGTACTGGTGT CTTGGGAAAGCGGAGAAGAAAGGAGGTAATATACAGTGACACATTAAGTGATTTACAATGGATTAAAACTGTCGAAAATGGAGAAGACATGCCCAAATTG TCAGGTAAAGGGAAGAAACAAGAACATACTCGGTCTGAAGCCAATGATTCTGCCAGCAATAGTGCAAGAACAGACAAAAAGGTTCTGGAAATGAGGAATG AATACACGCCTGTGGCAAGTGAGGGCACAAGTGAAGATACCTACGCTTCAGCCCCCAAAAGACCCAAGTCTGACGAGGCAGTCTCCCAAAAACCAGATTA TCAGGTTTCAGAAAAATCTGAACAAGGTGGTGGAGAAAGTGGTTTGAACAAGCATATATTTACTTGGAATACCTATAAGAAGAAGAGATCCAGTTATGTT ATTCCAAGTTCATCATCAAACACTAAAGGGCAGAATTCCAACGGAAAAGGAAATGGTTGGGCTTGA
AA sequence Show only first row Show all	>Potri.010G091200.2 pacid=42798393 polypeptide=Potri.010G091200.2.p locus=Potri.010G091200 ID=Potri.010G091200.2.v4.1 annot-version=v4.1 MVAQLEHHLQQDSPAASFSSSLEDHVQKTKSLISALNFVSRNLPLPLDLFNTVSSIYSDVGNADFDGGAQERSQLQGNPGISIRTDLMTGFEDALSKQRL NCMSGFSLAELRENRYQSHILHRLNELEELPSTRGEDLQMKCLLELHGLKLAELQSKVQSEVSSEYWLRLNCMFPDKQLFDWGMMRLPRPLYGIGDAFAM EADDQFRKKRDAERLSRLEDEERNHVETRKRKFFTEILNAVREFQLQVQATHKRRKQRNDGIQAWHGRQRQRATRAEKLRLQALKADDQEAYMRLVKESK NERLTMLLEETNNLLANLGAAVKRQKDSKHSDGIEPLRDSEADSPELDASRNESELDTYPEEDVIIDSNLNDDTGDLLEGQRQYNSAIHSIQEMVTEQPY ILKGGQLRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLKEKKGVCGPHLIVAPKAVLPNWINEFSTWISEAEIKAFLYDGCLEERKAIR EQLSREGNLQVLITHYDLIMRDKAFLKKIQWQYMIVDEGHRLKNHECALAKTIGGYQMKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSEDKFEEWFNA PFADRGEVSLTDEEQLLIIRRLHNVIRPFILRRKKNEVEKYLPGKTQVLLKCDLSAWQKVYYQQVTEMGRVGLHTGSGKSKSLQNLTMQLRKCCNHPYLF VGDYNMWRKDEIMRASGKFELLDRLLPKLHATDHRVLLFSQMTRLMDILEIYLQLHDYKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGL NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKKGIDAKVIQAGLFNTTSTAQDRKDMLEEIMHRGTSSLGTDVP SEREINRLAARSQEEFRIFEDMDKDRRKKEDYRSRLMEEHEVPEWAYQAPDNKEDKAKGFEQNSTGVLGKRRRKEVIYSDTLSDLQWIKTVENGEDMPKL SGKGKKQEHTRSEANDSASNSARTDKKVLEMRNEYTPVASEGTSEDTYASAPKRPKSDEAVSQKPDYQVSEKSEQGGGESGLNKHIFTWNTYKKKRSSYV IPSSSSNTKGQNSNGKGNGWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	0	1
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	2.00	0.8820
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	3.16	0.8828	GTE910
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.011G033000 [exp]	3.46	0.8720
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.008G098600 [exp]	3.74	0.8498
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	4.24	0.8468
AT4G26455		WIP1	WPP domain interacting protein...		Potri.001G472000 [exp]	5.47	0.8329
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	5.91	0.8599
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	7.41	0.8507	SEU.1
AT1G64050			unknown protein		Potri.001G098500 [exp]	8.00	0.8474
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	8.36	0.8550

Compare expression of checked genes

Potri.010G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.