Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KAPP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19280 635 / 0 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) AT4G31750 83 / 3e-17 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 80 / 5e-16 Protein phosphatase 2C family protein (.1) AT1G07160 76 / 1e-14 Protein phosphatase 2C family protein (.1) AT3G51470 76 / 1e-14 Protein phosphatase 2C family protein (.1) AT2G40860 74 / 2e-13 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT1G09160 72 / 2e-13 Protein phosphatase 2C family protein (.1.2) AT2G30020 72 / 4e-13 Protein phosphatase 2C family protein (.1) AT5G24940 71 / 1e-12 Protein phosphatase 2C family protein (.1) AT5G53140 67 / 9e-12 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149700 [exp] 963 / 0 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.018G013900 [exp] 82 / 4e-17 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 80 / 2e-16 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 77 / 2e-15 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 78 / 3e-15 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 76 / 1e-14 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 74 / 5e-14 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G007500 [exp] 73 / 1e-13 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 72 / 3e-13 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041216 [exp] 746 / 0 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10021929 [exp] 733 / 0 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10010521 [exp] 711 / 0 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10034062 [exp] 664 / 0 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10020104 [exp] 81 / 3e-16 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 79 / 4e-16 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 77 / 2e-15 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 77 / 2e-15 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 76 / 2e-14 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 76 / 2e-14 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.010G091500.1 pacid=42796864 polypeptide=Potri.010G091500.1.p locus=Potri.010G091500 ID=Potri.010G091500.1.v4.1 annot-version=v4.1 ATGAGTATGGCGATGATGTTACAAGGGAGCACTGCCGGTGTCTTTCTTCCTCTCCTTATGCTGCTTCTGGTCATTCTCCTTATCCTCATCGCCTGTAAAC CATGGCGTTTCTTCTCGTCCCTTTCTTCTCCTTCTCGCACTCTCAAGGTTGGTGAGTTAGAGAGGCCCCTTGTCTTGGATGATGCAAATGCACGTGATCA AGGCAATGAATTAACAAGAAGTAATGATCTAGAGGGAGCATATAGTCAAAATGAAGGGCTATCGCGCTCACCTTGGACTCATGGACTTGTATATAAGCAG AGGCTTCCTTCCGCTTCTCCCCAGTTGAACCAAGGTGATAGCATTGTTTTAGATGTAGTTTCGGACCAGATAGAGGAGCTTTCAACTGGCCAAACCTTCA GGTGCCTTTCATTGACAGAGCCCTTAGCTGAAGTGCAAAAGCATGCTAGACTGGAAGATCAGAATCCTAATTTGAAATATGGTTTGGAAAATGATTTACT TCAAGAGTTTGTGCCAAAGGTCATCACTGATCAAAGAAGTTGTCTCTCTCTGGAAGTTATCTCCGGTCCTTCTAGTGGGCTCCGTTGCTCTGTACAGTCA ATAAGTGGCCCACTGACCCTTGGGAGGGTTTCCAGTGACTTGCTATTGAAGGATTCAGAGGTGTCAGGGAAGCATGCTATGATCAACTGGAATGCGGATA AAAATAAATGGGAATTGGTGGACATGGGTAGCCTAAATGGAACGCTTTTGAATTCTCAGTTGATTAGCCATCCTGATTCTGGAAGTAGACTTTGGGGTGA TCCTGTTGAGCTTTCAAATGGAGATATAATAACGCTTGGCACAACCTCAAATGTTCATGTTCATGTGACCTCTAAATTTGAGAGCCAAACACCCTTCAGC GTGGGCATGGCATCAGATCCCATGGCTTTGCGACGAGGAGTAAAAAAGCTTGCCATGGAAGATGTGTGCTATTACCAGTGGCCCCTTCCTGGCATTCCCC AGTTTGGAGTATTTGGTATCTGTGATGGACATAGTGGAGTAGCTGCTGCAAAATCTGCTAGCAAAATGCTTCCTGAGAAGGTTGCCAGTATTCTGTCAGA TTCTCTTGTAAGGGAGAGGGTTTTATTGCAATGTGATGCCTCAGATGTTCTTAGAGTTGCATTTTCTCAAACTGAAGCTGATATGAATAACTATTATGAG GGTTGTGCTGCAACATTGCTTCTGGTTTGGGCTGATAGTGATGAAAATTTCTTTGCACAATGTGCCAATGTTGGAGATGCAGCTTGCATTATGAATGTTG ATGGGAAGCAGATTAAGATGACAGAAGATCACAGAGTAAGTAGTTACTCTGAAAGACTTCGACTTAATGAAACTGGAGAACCATTGAGAGATGGAGAAAC ACGGCTTTATGGCTTGAACCTTGCTCGGATGCTTGGTGACAAATTTCTGAAACAGCAGGAACCCCGCTTTAGTTCAGAGCCTTATATAAGTGAAACTGTA CATGTTAAGCAAGCGAGCAGTGCTTTTGCACTATTGGCGAGCGATGGCTTTTGGGATGTTATTAGTTTAAAGAAGGCCGTCCAGCTTGCCATGCAGGCAA AGCAGAAGTATTCTGCAGATGGAGAGAATGTAGCCGAGAAGGTTGCAAGCATTTTGTTGACCGAGGCTAAAACATTGCGAACAGAGGATAACACCTCTAT AGTTTTCTTGGACTTTGACAGAAAATTTAGAATATCTTGTAAAGTTGATTCTTAA
AA sequence Show only first row Show all	>Potri.010G091500.1 pacid=42796864 polypeptide=Potri.010G091500.1.p locus=Potri.010G091500 ID=Potri.010G091500.1.v4.1 annot-version=v4.1 MSMAMMLQGSTAGVFLPLLMLLLVILLILIACKPWRFFSSLSSPSRTLKVGELERPLVLDDANARDQGNELTRSNDLEGAYSQNEGLSRSPWTHGLVYKQ RLPSASPQLNQGDSIVLDVVSDQIEELSTGQTFRCLSLTEPLAEVQKHARLEDQNPNLKYGLENDLLQEFVPKVITDQRSCLSLEVISGPSSGLRCSVQS ISGPLTLGRVSSDLLLKDSEVSGKHAMINWNADKNKWELVDMGSLNGTLLNSQLISHPDSGSRLWGDPVELSNGDIITLGTTSNVHVHVTSKFESQTPFS VGMASDPMALRRGVKKLAMEDVCYYQWPLPGIPQFGVFGICDGHSGVAAAKSASKMLPEKVASILSDSLVRERVLLQCDASDVLRVAFSQTEADMNNYYE GCAATLLLVWADSDENFFAQCANVGDAACIMNVDGKQIKMTEDHRVSSYSERLRLNETGEPLRDGETRLYGLNLARMLGDKFLKQQEPRFSSEPYISETV HVKQASSAFALLASDGFWDVISLKKAVQLAMQAKQKYSADGENVAEKVASILLTEAKTLRTEDNTSIVFLDFDRKFRISCKVDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.010G091500 [exp]	0	1	Pt-KAPP.2
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	5.19	0.8612
AT1G32460			unknown protein		Potri.001G145066 [exp]	7.14	0.8399
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	13.49	0.8476
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.004G057100 [exp]	17.17	0.8384
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.006G264101 [exp]	22.64	0.8022
AT3G09320			DHHC-type zinc finger family p...		Potri.006G087400 [exp]	24.14	0.7804
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.015G071400 [exp]	24.81	0.7795
AT2G05755			Nodulin MtN21 /EamA-like trans...		Potri.014G157700 [exp]	24.91	0.7735
AT1G55830			unknown protein		Potri.001G370700 [exp]	30.00	0.8112
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	31.49	0.8387

Compare expression of checked genes

Potri.010G091500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.