Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27520 449 / 8e-160 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT3G05290 448 / 1e-159 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT2G39970 96 / 1e-22 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G66380 86 / 7e-19 ATFOLT1 folate transporter 1 (.1) AT5G07320 64 / 2e-11 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT1G34065 61 / 2e-10 SAMC2 S-adenosylmethionine carrier 2 (.1) AT2G37890 60 / 6e-10 Mitochondrial substrate carrier family protein (.1) AT4G32400 59 / 1e-09 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G61810 57 / 4e-09 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT1G14560 54 / 4e-08 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033800 [exp] 449 / 3e-160 AT3G05290 433 / 1e-153 peroxisomal adenine nucleotide carrier 1 (.1) Potri.013G023200 [exp] 448 / 1e-159 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1) Potri.010G192600 [exp] 106 / 2e-26 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 93 / 4e-21 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 88 / 9e-20 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.008G064800 [exp] 86 / 6e-19 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G200900 [exp] 67 / 2e-12 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.015G108900 [exp] 65 / 1e-11 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 65 / 1e-11 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010517 [exp] 471 / 2e-168 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1) Lus10034055 [exp] 443 / 1e-157 AT3G05290 427 / 3e-151 peroxisomal adenine nucleotide carrier 1 (.1) Lus10015188 [exp] 422 / 4e-149 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10031510 [exp] 421 / 1e-148 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10014839 [exp] 109 / 3e-27 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 106 / 3e-26 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 79 / 1e-16 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10001463 [exp] 72 / 4e-14 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10039847 [exp] 66 / 1e-11 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10013518 [exp] 61 / 2e-10 AT5G56450 485 / 8e-174 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.010G092100.1 pacid=42798884 polypeptide=Potri.010G092100.1.p locus=Potri.010G092100 ID=Potri.010G092100.1.v4.1 annot-version=v4.1 ATGGCCTTCGATTTGGAGTCTTTGTCAGAGGCAACATCCGGGGCAATTGGTGCTCTGGTTAGCACCACTATATCGTACCCACTTGACACCTGCAAGACCA AATATCAAGCTGAGGTTAGAGCTCATCATCAACAAAAGTATAGGAACATATCTGATGTTTTCTGGGAGGCAATTGCTTCCAGGCAGGTTCTTTCATTGTA TCAAGGCCTTGGGACGAAGAACTTGCAGTCTTTTATTTCACAATTTGTATATTTCTATGGGTACAGCTTCTTTAAGCGGTTATATTTGGAGAAAAGTAGG AACAAAACCATTGGAACAAAGGCAAATTTGATAGTGGCTGCTGCTGCTGGGGCTTGCACTGTCATAGTGACACAGCCTCTGGACACAGCATCCTCTAAAA TGCAAACAAGTGAATTTGGAAAATCCAGAGGACTTTGGAAAACCCTCTCGGAGGGCACTTGGAGTGAGGCATTTGATGGTCTTGGCATATCTCTTCTTCT GACATCAAACCCATCAATCCAGTACACAGTTTTTGATCAGTTGAAACGAAGACTACTGGAGCGGCAGCTCAGCAAAAGATCAAGCATAGAATCATCTCCA GAAGCACTCTCTGCCTTTTCTGCTTTTGTATTGGGTGCAGTTTCAAAGTGCATCGCGACGTGTGTCACATACCCAGCTATCAGATGTAAAGTGACGCTTC AGGCTGCTGAATCAGATGAAAGTGAGATCGAGGAAGTTCAAGCAAAAACCAAGACAATTTCAGGTGCACTCTATTCTATTTGGAAAAATGAAGGTTCGGC TGGTTTCTTCAAAGGGTTGCTGGCCCAGAACCTGAAGACTGTGCTGAGCTCAGCATTGCACTTGATGATAAAGGAGAAGATATCAAAGACTACATGGTTC CTGATGCTTGCACTTAAAAGGTATCTGTTTGTCACACGCAGCAGAATCAAGAGCACTTTATGA
AA sequence Show only first row Show all	>Potri.010G092100.1 pacid=42798884 polypeptide=Potri.010G092100.1.p locus=Potri.010G092100 ID=Potri.010G092100.1.v4.1 annot-version=v4.1 MAFDLESLSEATSGAIGALVSTTISYPLDTCKTKYQAEVRAHHQQKYRNISDVFWEAIASRQVLSLYQGLGTKNLQSFISQFVYFYGYSFFKRLYLEKSR NKTIGTKANLIVAAAAGACTVIVTQPLDTASSKMQTSEFGKSRGLWKTLSEGTWSEAFDGLGISLLLTSNPSIQYTVFDQLKRRLLERQLSKRSSIESSP EALSAFSAFVLGAVSKCIATCVTYPAIRCKVTLQAAESDESEIEEVQAKTKTISGALYSIWKNEGSAGFFKGLLAQNLKTVLSSALHLMIKEKISKTTWF LMLALKRYLFVTRSRIKSTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27520		AtPNC2, PNC2	peroxisomal adenine nucleotide...		Potri.010G092100 [exp]	0	1
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	7.21	0.8716	Pt-DGD2.1
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	10.67	0.8465	FIM1.1
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	11.31	0.8584
AT1G04590		EMB2748	unknown protein		Potri.016G103000 [exp]	14.45	0.8414
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Potri.006G213400 [exp]	15.96	0.7975	Pt-AFC1.2
AT1G16270			Protein kinase superfamily pro...		Potri.007G069500 [exp]	21.65	0.8038
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.009G067700 [exp]	22.80	0.8344
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	23.32	0.8690	Pt-NAP8.1
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	25.65	0.8447
AT5G52580			RabGAP/TBC domain-containing p...		Potri.006G066300 [exp]	28.77	0.7826

Compare expression of checked genes

Potri.010G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.