Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19210 655 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G12770 146 / 4e-38 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 134 / 6e-34 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 127 / 1e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 127 / 2e-31 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 127 / 4e-31 DEAD box RNA helicase family protein (.1) AT5G14610 122 / 1e-29 DEAD box RNA helicase family protein (.1.2) AT3G13920 119 / 1e-29 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT3G58570 122 / 2e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 121 / 3e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038300 [exp] 137 / 4e-35 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G123600 [exp] 128 / 8e-32 AT1G12770 711 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 127 / 2e-31 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 124 / 2e-30 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 124 / 3e-30 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G196000 [exp] 124 / 4e-30 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G071400 [exp] 124 / 4e-30 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.015G083000 [exp] 122 / 1e-29 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G197900 [exp] 119 / 3e-29 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034052 [exp] 699 / 0 AT5G19210 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010514 [exp] 518 / 0 AT5G19210 465 / 8e-164 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 142 / 6e-37 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 142 / 8e-37 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 132 / 8e-33 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 130 / 3e-32 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10016207 [exp] 130 / 3e-32 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 127 / 3e-31 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 126 / 3e-31 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032133 [exp] 126 / 6e-31 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.010G092200.1 pacid=42800036 polypeptide=Potri.010G092200.1.p locus=Potri.010G092200 ID=Potri.010G092200.1.v4.1 annot-version=v4.1 ATGGCTCCTATAATCTCAGCTACTCAGCAGCTTCCACAAGTTTCACACGCTGTTTTATATTCGAAACCCACTCGAACCGGTTTTTCTCTACTTCAGTCGC ATATTTTGTATTCGAACAGAGCTCTCTTCTATTCTAGATCAAGTTTTAGGCCATTAAAGGCCATTCTCAATTCCCCTTCACTAACCAAAGTAGCTGATGA TGCTAAAGAGAAGGGGGAGGCCTTGACTCTCCGCGAAATTTGCCTAGGTCGTGTACCCGAGCACTTGCTGCGCAGGGTAGAAGAGGTTGGATATGCGGTG CCAACGGATGTACAGAAACAAGCTTTGCCTGTTCTTTTTAGCGGCCGCGACTGCATACTTCATGCTCAGACAGGTTCTGGCAAGACTCTTGCATACTTAT TATTGATATTTTCTGTTATAAATACTCAAAGATCGGCTGTGCAAGCACTAATCGTGGTGCCTACTCGAGAACTTGGCATACAAGTTACAAAAGTTGCTCG GATGTTGGCTGCAACGCCAACAGAGAATGATGCGGAGCAGAAGTCTTGCACCGTCATGGCGCTTCTAGATGGAGGGATGTTGAGGAGACATAAGAGTTGG CTAAAGGCTGAGCCTCCTACAATAGTGGTGGCAACAATAGCTAGCTTGTGCCAAATGCTTGAGAAGCACTTGCTTAAACTTGAATCAATGCAAGTGCTGG TTATTGACGAGGTTGATTTCATGTTCAACTCTTCAAAACAAGTCAGTTCCCTGCGAAAGCTTTTGACATCTTATTCCTCATGCAATAGCCGTCAGACAGT TTTTGCTAGTGCATCCATCCCTCAGCACAACCGATTTTTATATGATTGCATACAGCAGAAGTGGACCAAGAGAGATGTAGTTCATGTCCATGTAAATCCA ATTGAGCCCATGCCAACATGCCTGCAACATAGATTCGTGATATGCAGTAAAAAGCAAAGGCATCAAACATTGCTCTCCTTACTGCAGTCTGACGCACCCA AGTCTGGCATTATTTTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGGAATGGTCCACCAACAATTGATTTAGTGGACTTTCTGAAAACTTCATA TGGGGGTTGTTCAGAAATCCTTCTTCTGGAGGAAGACATGAATTTCAATTCACGAGCAGCTTCATTATCTGAAGTGAGACAAGGAGGTGGCTATCTTCTT GTTGCAACGGACATTGCTGCAAGAGGGGTTGATCTTCCAGAAATAACTCATATATACAACTTCAATCTGCCAAGAACTGCTGTAGATTATCTTCATCGAG CTGGAAGAACAGGCAGAAAACCTTTTTCAGATGAGAAATGCAATGTTACCAGTATTATTATGCCAGAAGAGCGGTTTGTTTTGCAAAGATATGAGAACGA ATTGATGTTTAATTGCGAGGAGCTTTTTCTATAG
AA sequence Show only first row Show all	>Potri.010G092200.1 pacid=42800036 polypeptide=Potri.010G092200.1.p locus=Potri.010G092200 ID=Potri.010G092200.1.v4.1 annot-version=v4.1 MAPIISATQQLPQVSHAVLYSKPTRTGFSLLQSHILYSNRALFYSRSSFRPLKAILNSPSLTKVADDAKEKGEALTLREICLGRVPEHLLRRVEEVGYAV PTDVQKQALPVLFSGRDCILHAQTGSGKTLAYLLLIFSVINTQRSAVQALIVVPTRELGIQVTKVARMLAATPTENDAEQKSCTVMALLDGGMLRRHKSW LKAEPPTIVVATIASLCQMLEKHLLKLESMQVLVIDEVDFMFNSSKQVSSLRKLLTSYSSCNSRQTVFASASIPQHNRFLYDCIQQKWTKRDVVHVHVNP IEPMPTCLQHRFVICSKKQRHQTLLSLLQSDAPKSGIIFVGEQSEKSKKAGNGPPTIDLVDFLKTSYGGCSEILLLEEDMNFNSRAASLSEVRQGGGYLL VATDIAARGVDLPEITHIYNFNLPRTAVDYLHRAGRTGRKPFSDEKCNVTSIIMPEERFVLQRYENELMFNCEELFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19210			P-loop containing nucleoside t...		Potri.010G092200 [exp]	0	1
AT1G31410			putrescine-binding periplasmic...		Potri.003G105100 [exp]	1.00	0.8777
AT2G38570			unknown protein		Potri.006G109500 [exp]	4.47	0.8599
AT4G25280			P-loop containing nucleoside t...		Potri.015G129000 [exp]	8.48	0.8015
AT1G31160		HINT2 ,HINT 2	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Potri.015G124700 [exp]	14.38	0.8569
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.006G086500 [exp]	24.45	0.8198
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	26.53	0.8213
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.012G060100 [exp]	29.32	0.7637
AT1G16840			unknown protein		Potri.010G252800 [exp]	39.91	0.7633
AT5G20300		Toc90	translocon at the outer envelo...		Potri.006G063500 [exp]	41.47	0.7892
AT5G63520			unknown protein		Potri.015G098700 [exp]	44.42	0.7763

Compare expression of checked genes

Potri.010G092200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.