Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14220 248 / 8e-79 RHF1A RING-H2 group F1A (.1) AT5G22000 187 / 1e-55 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT5G38895 63 / 3e-11 RING/U-box superfamily protein (.1.2.3) AT4G00335 61 / 8e-11 RHB1A RING-H2 finger B1A (.1.2.3) AT3G02290 61 / 1e-10 RING/U-box superfamily protein (.1.2) AT5G15790 61 / 2e-10 RING/U-box superfamily protein (.1.2) AT5G41350 60 / 3e-10 RING/U-box superfamily protein (.1) AT4G23450 57 / 8e-10 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G56340 55 / 5e-08 ATCRT1 RING/U-box superfamily protein (.1) AT3G58720 52 / 3e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149300 [exp] 592 / 0 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 195 / 2e-58 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.016G066400 [exp] 178 / 1e-51 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 175 / 1e-50 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.010G140300 [exp] 68 / 5e-13 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.017G100100 [exp] 64 / 2e-11 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.004G114800 [exp] 62 / 5e-11 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.014G087000 [exp] 62 / 1e-10 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.001G101700 [exp] 61 / 1e-10 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010513 [exp] 280 / 3e-91 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 267 / 7e-86 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10013606 [exp] 180 / 9e-53 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 177 / 1e-51 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 176 / 6e-51 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 173 / 2e-49 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 152 / 1e-42 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 145 / 5e-40 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10017788 [exp] 61 / 1e-10 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10024635 [exp] 60 / 3e-10 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G092300.1 pacid=42797729 polypeptide=Potri.010G092300.1.p locus=Potri.010G092300 ID=Potri.010G092300.1.v4.1 annot-version=v4.1 ATGGCGAATTTCTCTTCTCTTACGTCTTCATTCTCTGATACTCCAATGGTTTCAGCTGCTGTTGCGTCGTCGTCTTCCTCCTCTTCTTCTCTCGGAGCTG GAGTCGACGATGCTTTCGAAGACGACTCTTGCAGTATTTGCCTCGATCCTTTCACCGCTCAAGACCCTGCCACTGTTACCTGCTGCAATCATGAATATCA TCTTCAGTGTATTCTTGAATGGTCGCAGAGAAGCAAAGAATGCCCAATTTGCTGGCAGCTTCTTGTCCTGAAAGACCATGCCAGCCAAGAACTTCTAGCC GCTGTCGAGACTGAGAGGCTCTTAAGGTCAAGGAACTCGACTCCTGCATCCATGATCGTTCCTCACTTGGATGATGATTATGACATAGAACAGGATTCCT ATTCAGATGACTCTGATTTCGATGAGCATATCATGCAGCATCTTGCTGCCGCTGCCTCCAGCAGAGCTCATCATGTTCACGAAAGGGAGAGGCAGAGGTC TAACGGACTTGGTCCCTCCCAGGTTATTGCCTTTACCTCTCCTGAACATGTAGCCACTGTTCAGCAAACATGCACTTCACCAGAAGAAGGTCAAACTTTA ATTCATGGCTCATCAGTGATCAATTCACCAACTCCTGACACACTATCAGTTAACGTTCAAAATTTGTCATCTGTGACCCCTCCTGACGTGAACCAAGTTT CTACTACTGCTGTCAATAGCCCCTTCAAACCCAGGATTCTCTTTAGACAGCCACCAACTGATACACCCCAGGAGCAAGGTTCATCGGAGGTGCTATCTCT CTCAGACTCTATTAAATCTAAATGGTTTGCTGCTTCAGCCAGGTACAAGGACTCACTTTCAAAAAGTACTAGAGGCATAAAGGAAAAGCTAGTTGCAAGG AATAATTCGGTCAAGGAGCTGAGCAAAGAAGTTCAGAGGGAAATGAGTGCAGGAATTGCTGGTGTTGCACGAATGATTGAGCGCTTGGATCTTACCACAA AACGCACGGGACCCTCCATGTCTGATTCTGGTTTTACTGGGGCAACTTCAAATTTCTCCTGGAAGGGGAAGGGTGTGGAACAGAACATCATTGCTCAGGC TTTGGCCAAAACAAGTGAGGAAATTGATCGTGATACAAGTTTAGGTGCATCCTCACATGCCTCTGGTACTGTCCAAGCCCGAGTGGAAATCTCCCATGTA CAGAGAGGTCATTAA
AA sequence Show only first row Show all	>Potri.010G092300.1 pacid=42797729 polypeptide=Potri.010G092300.1.p locus=Potri.010G092300 ID=Potri.010G092300.1.v4.1 annot-version=v4.1 MANFSSLTSSFSDTPMVSAAVASSSSSSSSLGAGVDDAFEDDSCSICLDPFTAQDPATVTCCNHEYHLQCILEWSQRSKECPICWQLLVLKDHASQELLA AVETERLLRSRNSTPASMIVPHLDDDYDIEQDSYSDDSDFDEHIMQHLAAAASSRAHHVHERERQRSNGLGPSQVIAFTSPEHVATVQQTCTSPEEGQTL IHGSSVINSPTPDTLSVNVQNLSSVTPPDVNQVSTTAVNSPFKPRILFRQPPTDTPQEQGSSEVLSLSDSIKSKWFAASARYKDSLSKSTRGIKEKLVAR NNSVKELSKEVQREMSAGIAGVARMIERLDLTTKRTGPSMSDSGFTGATSNFSWKGKGVEQNIIAQALAKTSEEIDRDTSLGASSHASGTVQARVEISHV QRGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Potri.010G092300 [exp]	0	1
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	2.00	0.8277
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Potri.019G087000 [exp]	2.82	0.8018
AT1G09600			Protein kinase superfamily pro...		Potri.004G226900 [exp]	5.47	0.7857
AT1G75810			unknown protein		Potri.005G241200 [exp]	5.74	0.7680
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	6.24	0.8073
AT5G43230			unknown protein		Potri.008G177500 [exp]	7.34	0.8199
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	9.48	0.7698	AUX1.1
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.002G036200 [exp]	12.64	0.7712
AT5G11460			Protein of unknown function (D...		Potri.018G035400 [exp]	14.69	0.7710
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	14.73	0.7763

Compare expression of checked genes

Potri.010G092300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.