Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02740 208 / 9e-67 WHY3, ATWHY3, PTAC11 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) AT1G14410 202 / 4e-64 WHY1, ATWHY1, PTAC1 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) AT1G71260 127 / 3e-35 WHY2, ATWHY2 WHIRLY 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149100 [exp] 261 / 1e-87 AT2G02740 321 / 4e-111 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) Potri.003G048700 [exp] 122 / 1e-33 AT1G71260 283 / 5e-97 WHIRLY 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036723 [exp] 216 / 1e-69 AT1G14410 342 / 1e-119 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) Lus10017892 [exp] 119 / 2e-32 AT1G71260 271 / 3e-92 WHIRLY 2 (.1) Lus10035067 [exp] 119 / 5e-32 AT1G71260 270 / 1e-91 WHIRLY 2 (.1) Lus10037206 [exp] 114 / 3e-29 AT1G14410 227 / 1e-72 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [poplar] [flax] sPC4_like PF08536 [poplar] [flax] Whirly Whirly transcription factor
Representative CDS sequence Show only first row Show all	>Potri.010G092500.2 pacid=42799315 polypeptide=Potri.010G092500.2.p locus=Potri.010G092500 ID=Potri.010G092500.2.v4.1 annot-version=v4.1 ATGTTGCAGCTAAACAGTGTGAGCTGGTTGAGTAGTACCACCCAAAACCCTATGCTATGGCTTCCCCAATCCAACAGTCAAAGCTCACAAGATAGTAGCG CATTTAACAGTATTAGTAATAGTAAAACCTCGAACACCAAGAAGAAGAAAAAATTGAGTGTGAAATACCAGTACTACGACCACCAGCAGAAGAGCTTCAC CTCTTCCTCACGGCCGTCTTCTTCTTCTGCTCCTCCAGTTGGAGAATCTCCGCCCAAGGTTTTTGTGGGCCATTCAATATACAAAGGGAAGGCTGCTCTT ACAATCGAGCCTCGAGCCCCAGAGTTTTCCCCATTAGAGTCAGGGGCATATAAATTAGTCAAGGAAGGCTTCGTGCTGTCACAGTTTGCTCCTGCATCTT CTGCTCGTCAATATGATTGGACGAGAAAGCAGGTATTTTCATTGTCGGTGACAGAAATTGGACATCTTGTAAGTCTTGGTGCAAGAGATTCCTGTGAGTT TTTTCACGATCCTAATAAGGGAAGAAGCGAGGAAGGTAAGGTCAGGAAGGTGTTGAAGGTAGAGCCACTTCCAGATGGTTCTGGTCACTTCTTTAACCTC AGTAATTCTCTTTTCCCACAACTCCTGGTACTGAATTCCAAAAGCATGTTCTATGTGAAGATGATGCATCAATTCTCAGTTAATTTCCTGAGGACTTATC ATATTCACATGAGTTCTTGCTCATTTATCACCCTGATAAAGCTTCACATATGTCTACTACCACATCTGGGCGAAAAGAACCATCAATTATTATTAGTATT TAAATCATGTGTGATGTATGGTTGA
AA sequence Show only first row Show all	>Potri.010G092500.2 pacid=42799315 polypeptide=Potri.010G092500.2.p locus=Potri.010G092500 ID=Potri.010G092500.2.v4.1 annot-version=v4.1 MLQLNSVSWLSSTTQNPMLWLPQSNSQSSQDSSAFNSISNSKTSNTKKKKKLSVKYQYYDHQQKSFTSSSRPSSSSAPPVGESPPKVFVGHSIYKGKAAL TIEPRAPEFSPLESGAYKLVKEGFVLSQFAPASSARQYDWTRKQVFSLSVTEIGHLVSLGARDSCEFFHDPNKGRSEEGKVRKVLKVEPLPDGSGHFFNL SNSLFPQLLVLNSKSMFYVKMMHQFSVNFLRTYHIHMSSCSFITLIKLHICLLPHLGEKNHQLLLVFKSCVMYG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02740		WHY3, ATWHY3, P...	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.010G092500 [exp]	0	1
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Potri.001G358400 [exp]	1.73	0.9673
AT2G20725			CAAX amino terminal protease f...		Potri.019G101100 [exp]	9.79	0.9308
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Potri.008G146700 [exp]	10.09	0.9496
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	10.58	0.9468
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	11.31	0.9348
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	15.39	0.9469
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.016G136700 [exp]	16.30	0.9390
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Potri.019G025100 [exp]	20.12	0.9351
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	23.74	0.9408
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	24.59	0.9410

Compare expression of checked genes

Potri.010G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.