Plant FIBer expression Database

Potri.010G092600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20220 429 / 6e-149 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
AT5G51300 43 / 0.0003 splicing factor-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G144600
[exp]
47 / 1e-05 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Potri.016G063800
[exp]
46 / 3e-05 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1)
Potri.009G155500
[exp]
45 / 0.0001 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1)
Potri.012G141700
[exp]
41 / 0.0009 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036722
[exp]
336 / 3e-113 AT5G20220 322 / 3e-108 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
Lus10010847
[exp]
43 / 0.0002 ND 40 / 6e-04
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0511 Retroviral_zf PF13696 zf-CCHC_2 Zinc knuckle
Representative CDS sequence
>Potri.010G092600.4 pacid=42798926 polypeptide=Potri.010G092600.4.p locus=Potri.010G092600 ID=Potri.010G092600.4.v4.1 annot-version=v4.1
ATGAGAATCTATGTTGTTGGTCAGTTAAGAATTGAGATAGAGATCACAAACATAAACATGTCCTCCTTATGGTCTCTTGGAGTTGGGCTTGGGACCATTA
TTCCTGCCTCTACAGGTCATAATAACAATAAGTGGAGAAGGCACAGTAATACTCACTTCCTCATTGTGCTTCATTGTTCCACCACCACTCGGAGAAGCTC
TCCTCCTCTCATTTCCTGCTCCTCCTCCTCCTCATCATCATCGTCAAACAATCACAACTCATTGCCCAAACAAACCTCTCCTCAGTTGGGTTATGATCCT
TCAGCGGACTTACTTGGAATCCAGGTCAATCCAAAGCCAAGGAATGATATATCCTCCGATCCACCAAAACCAAGGTCTTGGTTTGGTCCGAGTGGTCAGT
ATATCAGAGAGCTTCCCTGCCCAAGTTGTAGAGGAAGGGGTTATACTCCATGCTCTGAGTGTGGAATTGACAGATTCAGATTAGATTGTTCACTCTGTAA
TGGAAAGGGTATGATGACTTGTCGTCAATGCTTGGGTGATTGTGTCATATGGGAAGAGTCAATTGACGAGCGACCATGGGAAAAAGCCCGCTCAATTTCT
CCATTCAAGGTGAAGGAGGACGATGATGTAGACAATTTGGAAATAGAGCTGGCGAAGAAAAAATCAAAGCGTGTTTACCAATCACTGTCTCCTGAAGTTG
GACTGAAGATTAGTAGATCACTAAAAAGTCTCAATGCGAAAACTGGACTATTTAGTAAAAGAATGAAGATCATCCATCGTGATCCTATGCTTCATGCACA
ACGAGTGGCTGCAATCAAGAAAGCAAAAGGAACTGCTGCGGCAAGAAAACGAGCTTCTGAAACTTTGAAAGCTTTCTTTAGTGATCCCGAGAACCGTAAA
AAACGGAGCATTGCCATGAAAGGAGTGAAATTTTACTGTTCCAATTGTGGACGTGAAGGGCACAGGAAACACTACTGTCCAGAACTCAAGGATAGCTTGG
TAGATAGGCGGTTTAAGTGTCGGCTTTGTGGAAAAAAGGGACACAACAGAAGAACCTGTCCAAAGTCAAGAATGAGCAATCATAAAGGCAAAGTTACATG
GCATCATCGCTGCAGGATATGTCGTCAAGGAGGCCACAATCGCAGGTCCTGCCCTCAAGTGGTTGGGATAAAATTTGGTGGCAGCGATACATTCAAAGGT
TTTATGGTTTCTGGAAGCAGAAAATACACTTGTCGATTGTGTCGAGAAAAGGGCCACAATGCGAGGACATGTCCTAGCAGAAACACAAGGCCTGCAATGC
TTAGTCCTCCACGTGAATAG
AA sequence
>Potri.010G092600.4 pacid=42798926 polypeptide=Potri.010G092600.4.p locus=Potri.010G092600 ID=Potri.010G092600.4.v4.1 annot-version=v4.1
MRIYVVGQLRIEIEITNINMSSLWSLGVGLGTIIPASTGHNNNKWRRHSNTHFLIVLHCSTTTRRSSPPLISCSSSSSSSSSNNHNSLPKQTSPQLGYDP
SADLLGIQVNPKPRNDISSDPPKPRSWFGPSGQYIRELPCPSCRGRGYTPCSECGIDRFRLDCSLCNGKGMMTCRQCLGDCVIWEESIDERPWEKARSIS
PFKVKEDDDVDNLEIELAKKKSKRVYQSLSPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPMLHAQRVAAIKKAKGTAAARKRASETLKAFFSDPENRK
KRSIAMKGVKFYCSNCGREGHRKHYCPELKDSLVDRRFKCRLCGKKGHNRRTCPKSRMSNHKGKVTWHHRCRICRQGGHNRRSCPQVVGIKFGGSDTFKG
FMVSGSRKYTCRLCREKGHNARTCPSRNTRPAMLSPPRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G20220 zinc knuckle (CCHC-type) famil... Potri.010G092600
[exp]
0 1
AT5G57060 unknown protein Potri.003G044400
[exp]
1.41 0.8709
AT3G13350 ARID HMG (high mobility group) box ... Potri.011G168800
[exp]
4.58 0.8175
AT1G30680 toprim domain-containing prote... Potri.001G461200
[exp]
4.69 0.8543
AT2G21240 BBR_BPC BPC4, BBR/BPC4,... basic pentacysteine 4 (.1.2) Potri.004G163700
[exp]
7.61 0.7097
AT1G16445 S-adenosyl-L-methionine-depend... Potri.007G069400
[exp]
11.74 0.7913
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.001G094100
[exp]
13.67 0.7789
AT3G10160 ATDFC, FPGS2 folylpolyglutamate synthetase ... Potri.006G045400
[exp]
15.74 0.7074
AT3G18140 Transducin/WD40 repeat-like su... Potri.016G052800
[exp]
22.91 0.7880
Potri.013G037900
[exp]
25.23 0.7628
AT1G05385 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, phot... Potri.008G152800
[exp]
25.37 0.7620

Potri.010G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.