Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69830 1236 / 0 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 414 / 2e-136 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) AT4G25000 351 / 5e-112 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1) AT4G24450 45 / 0.0003 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093200 [exp] 518 / 3e-169 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 418 / 1e-137 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Potri.014G029400 [exp] 385 / 2e-125 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.002G126300 [exp] 380 / 4e-123 AT4G25000 591 / 0.0 alpha-amylase-like (.1) Potri.010G044100 [exp] 50 / 7e-06 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.008G188150 [exp] 44 / 0.0005 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013270 [exp] 1266 / 0 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 1261 / 0 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 1240 / 0 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10036717 [exp] 1232 / 0 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 413 / 4e-136 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10042655 [exp] 351 / 6e-112 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10021728 [exp] 349 / 3e-111 AT4G25000 563 / 0.0 alpha-amylase-like (.1) Lus10013044 [exp] 48 / 4e-05 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10029118 [exp] 46 / 0.0002 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 44 / 0.0005 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF07821 [poplar] [flax] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain
Representative CDS sequence Show only first row Show all	>Potri.010G092900.1 pacid=42799957 polypeptide=Potri.010G092900.1.p locus=Potri.010G092900 ID=Potri.010G092900.1.v4.1 annot-version=v4.1 ATGTCGGCAGTTAGCGTAGAGCCTTTCCTTCGATACTCTCGCTTTGAAAAGCCCGGATATGCTCGTAGCAGGAGAAAGGCTGCTATAACTGTCACTACTG CTGCTCTCATCAAATCTCCTTCGTCTTTTAATTGTTGCTGTTCACTAATACCAAGACGAAAACTCCTGTCAAATGCCTCCTACTTCCCTTTTCTTGACCT TCATAGGGTCAAAACCCACACGGCTAGAGCTAGCTCCACCGATACGGCTCTTGTTGAGTCCACTAATGATGTCGTATTCAAAGAGACCTTCCCTCTTTCG CGTACTGAAATGACTGAAGGAAAGATTTTTGTAAGATTAGATCAGAGTAAGGCCAAGGAGAAGGAGGATCAATGGCAGCAGCTTACTGTAGGGTGTAGTC TTCCAGGGAAATGGATTCTTCATTGGGGTGTTTCTTATGTCGATGATACTGGCAGTGAATGGGATCAACCTCCTGAGAATATGAGACCCCCTGGTTCGAT TCCTGTAAAGGACTATGCCATAGAGACGCCGTTAAAGAAGGCATCAGAAGGAGATAAGTTTCACCAAGTGAAGATAGGGATTGATCCCAAAAGTCCGGTT GCAGCCCTGAATTTTGTTTTGAAGGATGAAGAAACTGGAGTTTGGTATCAGCACAAAGGGAGAGATTTCAAGGTGCCTCTTGTGGACTGCTTGCTCGATT CTGGCGGTGGAAACGTCATAGGAGCAAAGGGGGGCTTTAGTATGTGGCCAGGGGCAATGCTTTCTAACATGTTCCTCAAAGCAGATGCATTGGCTTCTGA AGGTAAAGATAGCAGCAGCAGATCCAAAGACCCTAAACAAGAAACTAGGAAGGTAGAAGGATTCTATGAAGAGCTGCCTATTGCTAAATTTGCCGTGATT GAAAACTCAGTGACTGTTTCAGTTATCAAGTGTCTCAAGACAGCCAAGAATCTTCTCTATTTAGTAACTGATCTACCTGGAGAAGTTGTTGTTCACTGGG GAGTTTGCAGAGATGATGCTAAAAAATGGGAAATTCCAGCTGCTCCACATCCACCAGAAACAACTGTGTTTAAGAACAAGGCTTTGCGGACTGTGCTACA GGCAAAAGAGGATGGAAATGGACGTTCAGGGTCATTTACTTTGGACGAAGACCTTGTAGGCTTCCTTTTCGTTCTCAAGCTAAATGATAGCACTTGGTTG AATTGTATGGGAAATGATTTCTATATCGCTCTCCCAATCTCAAGTAGCATTCCTGCTCTATCAGGAGCCGGACAATCTGAAGTTGCACCAGTATCTGAAA ACACTGTAGGAGCAGATCAAGAAGTTTCTCATGCTATATATACTGATGGTATAATTAATGAAATACGGAGCTTAGTTAGTGACTTTTCCTCTGAGAAGAG ACAGAAGACAAAAACAAAAGAAGCACAAGAAAGCATTCTCCAAGAAATTGAAAAATTGGCTGCTGAAGCATACAGTATCTTCAGAAGCTCAATTCCAACT TTTCTGGATGAAACTGCTCTGGAATCCGAGGCAACAGAGGCTCCTAAAATATGCTCAGGAACTGGCACTGGTCATGAAATATTGCTCCAAGGTTTTAATT GGGAATCCCATAAATTGGGACATTGGTACATGGAGCTAAAACAAAAAATTGAAGAAATATCATCCCTTGGATTCACTGTGGTTTGGTTGCCCCCACCAAC AGAATCTGTGTCACCTGAAGGTTACATGCCAAAAGATTTGTATAATCTTAACTCCAGATATGGAAATATTGATGAGCTGAAGGATCTTGTGAAGAGATTC CATGGAAAGGGTGTTAAAGTTCTTGGAGATGCTGTTTTGAACCATCGTTGTGCACACTACAAGAATGGGAATGGTGTATGGAATATTTTTGGAGGCCGCT TGAATTGGGATGACCGGGCAGTTGTTGCAGATGATCCACATTTTCAGGGTAGGGGAAACAAAAGTAGTGGAGATAATTTTCATGCTGCCCCAAACATTGA TCATTCACAAGAATTTGTAAGAAAGGATCTCAAAGAATGGTTACTCTGGCTAAGAAAAGAGATCGGGTATGATGGATGGAGGCTTGATTTTGTGAGAGGA TTTTGGGGTGGTTATGTGAAGGATTACTTGGATGCAAGTGAACCTTATTTTGCTGTTGGTGAGTATTGGGATTCCCTCAGTTATACATACGGTGAATTGG ATCACGATCAAGATGCACATCGGCAGAGAATTGTTGACTGGATTAATGCCACCAGTGGGACTGCTGGTGCATTTGATGTCACCACAAAAGGGATTCTTCA TACGACACTGGAAAGGTGCGAGTATTGGCGATTATCAGATCAGAAAGGAAAGCCTCCTGGGGTTGTCGGATGGTGGCCATCTCGTGCTGTTACCTTCATA GAGAATCATGACACTGGTTCTACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGCAAGGATATGCTTACATCTTGACTCATCCAGGAACACCAG CAGTGTTCTATGATCACATATTTTCTCATTATCAATCTGAAATCGCAGCTCTCATCTCTCTAAGAAACCGGAACAAAATCCACTGTCGGAGCACTGTTAA AATTACCAAGGCGGAGAGGGATGTGTACGCGGCCATCATTGATGAGAAAGTGGCGGTGAAAATTGGACCGGGTCATTACGAACCGCCAAGTGGGCCCTAC AGTTGGTCTTCAAAAATCGAAGGGAGGAATTACAAGGTCTGGGAAGCATCTTAA
AA sequence Show only first row Show all	>Potri.010G092900.1 pacid=42799957 polypeptide=Potri.010G092900.1.p locus=Potri.010G092900 ID=Potri.010G092900.1.v4.1 annot-version=v4.1 MSAVSVEPFLRYSRFEKPGYARSRRKAAITVTTAALIKSPSSFNCCCSLIPRRKLLSNASYFPFLDLHRVKTHTARASSTDTALVESTNDVVFKETFPLS RTEMTEGKIFVRLDQSKAKEKEDQWQQLTVGCSLPGKWILHWGVSYVDDTGSEWDQPPENMRPPGSIPVKDYAIETPLKKASEGDKFHQVKIGIDPKSPV AALNFVLKDEETGVWYQHKGRDFKVPLVDCLLDSGGGNVIGAKGGFSMWPGAMLSNMFLKADALASEGKDSSSRSKDPKQETRKVEGFYEELPIAKFAVI ENSVTVSVIKCLKTAKNLLYLVTDLPGEVVVHWGVCRDDAKKWEIPAAPHPPETTVFKNKALRTVLQAKEDGNGRSGSFTLDEDLVGFLFVLKLNDSTWL NCMGNDFYIALPISSSIPALSGAGQSEVAPVSENTVGADQEVSHAIYTDGIINEIRSLVSDFSSEKRQKTKTKEAQESILQEIEKLAAEAYSIFRSSIPT FLDETALESEATEAPKICSGTGTGHEILLQGFNWESHKLGHWYMELKQKIEEISSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDLVKRF HGKGVKVLGDAVLNHRCAHYKNGNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDLKEWLLWLRKEIGYDGWRLDFVRG FWGGYVKDYLDASEPYFAVGEYWDSLSYTYGELDHDQDAHRQRIVDWINATSGTAGAFDVTTKGILHTTLERCEYWRLSDQKGKPPGVVGWWPSRAVTFI ENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPAVFYDHIFSHYQSEIAALISLRNRNKIHCRSTVKITKAERDVYAAIIDEKVAVKIGPGHYEPPSGPY SWSSKIEGRNYKVWEAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.010G092900 [exp]	0	1
AT3G46540			ENTH/VHS family protein (.1)		Potri.001G239200 [exp]	2.82	0.9361
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	4.00	0.9390
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	5.91	0.9358	Pt-NAP8.1
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	6.32	0.9413	Pt-CLPC.2
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	6.48	0.9366
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	9.48	0.9191
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	10.00	0.9292
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	11.31	0.9236
AT5G42390		SPP	stromal processing peptidase, ...		Potri.014G149200 [exp]	13.07	0.9294
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.015G093600 [exp]	15.00	0.9250

Compare expression of checked genes

Potri.010G092900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.