Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MYB124.2,MYB196
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02820 470 / 4e-163 MYB ATMYB88 myb domain protein 88 (.1.2) AT1G14350 449 / 1e-155 MYB FLP, AtMYB124 FOUR LIPS, myb domain protein 124, Duplicated homeodomain-like superfamily protein (.1.2) AT5G40360 99 / 1e-22 MYB ATMYB115 myb domain protein 115 (.1) AT3G27785 98 / 6e-22 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT2G25230 94 / 1e-21 MYB ATMYB100 myb domain protein 100 (.1) AT3G09370 97 / 2e-21 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 97 / 4e-21 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G58850 93 / 3e-20 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 92 / 5e-20 MYB ATMYB64 myb domain protein 64 (.1) AT5G11510 92 / 1e-19 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148400 [exp] 780 / 0 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.006G085600 [exp] 102 / 3e-23 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.012G082000 [exp] 94 / 1e-20 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.015G077700 [exp] 94 / 1e-20 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.003G123800 [exp] 92 / 5e-20 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.006G241700 [exp] 92 / 2e-19 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.001G347200 [exp] 91 / 2e-19 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.007G106100 [exp] 89 / 2e-19 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.014G079300 [exp] 91 / 3e-19 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030494 [exp] 484 / 5e-169 AT2G02820 457 / 4e-158 myb domain protein 88 (.1.2) Lus10012847 [exp] 469 / 1e-162 AT2G02820 447 / 3e-154 myb domain protein 88 (.1.2) Lus10036728 [exp] 178 / 2e-52 AT2G02820 166 / 2e-48 myb domain protein 88 (.1.2) Lus10037202 [exp] 176 / 3e-51 AT2G02820 168 / 1e-48 myb domain protein 88 (.1.2) Lus10022256 [exp] 96 / 3e-21 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10008010 [exp] 96 / 4e-21 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10024394 [exp] 95 / 1e-20 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10025351 [exp] 95 / 1e-20 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10011687 [exp] 95 / 3e-20 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10040684 [exp] 92 / 5e-20 AT5G58850 261 / 5e-84 myb domain protein 119 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G093000.1 pacid=42799948 polypeptide=Potri.010G093000.1.p locus=Potri.010G093000 ID=Potri.010G093000.1.v4.1 annot-version=v4.1 ATGCAAGCCACAAACAAGTGGAAGAAGAATGCTTGTGGAAATCATGAAGAAGAATCGAAGAAGAAGGAGAGACACATAGTCACATGGACTCAACTGGAAG ATGATATACTTCGGCAGCAGATCAGCCTAAATGGGACTGAAAATTGGGCTATCATTGCTTCTAAATTCAAGGATAAAACCACAAGACAATGCAGAAGAAG ATGGTACACATATCTGAACTCTGATTTCAAGAAAGGCGGATGGTCACCAGATGAAGACATGCTCTTGTGCGAGGCACAAAAAATATTTGGAAACAGATGG ACAGAAATTGCAAAGGTTGTTTCAGGCAGAACGGATAATGCTGTTAAGAACCGTTTCTCCACGTTGTGCAAGAAGAGAGCAAAATACGAGGCTTTAGCAA AAGAGAACAGAAGCACACATATCAACTTAAATAACAAAAGAATCATGTTACATCATGGGTTAAACGGAGACGGAGCACCAGAAAGTGATCCTCCAATTAA GAAGATAAGGAAGTCCCACATCCCTGGTCTTGCAGGAAATTGCAACTTTGGAGACAGATCACACCCACAATATGGAAATCAGCAACCTAGACCTCCATTT GCAGTGTTGGCCCAAAACCTTCACAATGTTAACGTGGCTTCCCAACATCATGTCAGCGGTGTCAAGGAGGTCTCCATTGATGCAGTTCAAAACAGTATGA TTCAGAGAACATTTCTCAAAAAGGATGATCCAAAGATAACTGCTCTAATGCAACAAGCAGAGCTTCTCAGCTCACTTGCACTGAAAGTTAGTGAAGAAAA TACAGACCAGAGTCTGGAAAATTCTTGGAAGGTTCTCCAAGATTTCCTGAATCGGAGCAAAGAAAATGTACATGGACAAAAAATCTGTGACATTGATTTT AAACTTGATGATTTTAAAGACCTGATAGAGGATCTAAGGAGTAGTAATGATGGAAGTCGACCATCTTGGAGGCAACCTGGTTTATATGAGGAGTCTCCAG CCAGTTCTGAATACAGTACAGGATCAACTCTACTGCCATACCCAGCCCCTGACAAAACAGAACAAACTCAAGCTGAGATTGGTGCACTGCATAAGGATAT TGAAATTGAAATGCAAATGGTTCGTATTGACGAAGAAAATTTTGTGGGTGCATGTGGTAAAGAAATTATTTCCAGTGCAGATATAACCCAAGTGGAGATG TTTCCATCCTGTGATGAGCAAACAAAAAACGACATAGTTGTTTCTGCCTCATCGAGCACAGAGTTCAGTTCCCCTCTTCAAGTTACCCCACTTTTCAGAT CCTTAGCAGCAGGAATTCCCAGCCCAAAATTTTCAGAGAGTGAGAGAAACTTCCTACTAAAAACACTTGGAGTGGAGTCTCCTTGCCCTGGTCCAAGCAT CAATCCTTTGCAACCACCACTCTGCAAACGAGCACTTCTGCAGAGTCTATAG
AA sequence Show only first row Show all	>Potri.010G093000.1 pacid=42799948 polypeptide=Potri.010G093000.1.p locus=Potri.010G093000 ID=Potri.010G093000.1.v4.1 annot-version=v4.1 MQATNKWKKNACGNHEEESKKKERHIVTWTQLEDDILRQQISLNGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPDEDMLLCEAQKIFGNRW TEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENRSTHINLNNKRIMLHHGLNGDGAPESDPPIKKIRKSHIPGLAGNCNFGDRSHPQYGNQQPRPPF AVLAQNLHNVNVASQHHVSGVKEVSIDAVQNSMIQRTFLKKDDPKITALMQQAELLSSLALKVSEENTDQSLENSWKVLQDFLNRSKENVHGQKICDIDF KLDDFKDLIEDLRSSNDGSRPSWRQPGLYEESPASSEYSTGSTLLPYPAPDKTEQTQAEIGALHKDIEIEMQMVRIDEENFVGACGKEIISSADITQVEM FPSCDEQTKNDIVVSASSSTEFSSPLQVTPLFRSLAAGIPSPKFSESERNFLLKTLGVESPCPGPSINPLQPPLCKRALLQSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.010G093000 [exp]	0	1	MYB124.2,MYB196
AT2G26520			unknown protein		Potri.009G106300 [exp]	3.60	0.8543
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.003G202100 [exp]	5.00	0.8449
AT4G00950		MEE47	maternal effect embryo arrest ...		Potri.014G100200 [exp]	5.65	0.8643
					Potri.002G068333 [exp]	7.74	0.8672
AT5G55650			unknown protein		Potri.014G167700 [exp]	8.66	0.8519
AT2G16385			unknown protein		Potri.009G119900 [exp]	10.53	0.8829
AT2G31130			unknown protein		Potri.004G055300 [exp]	11.40	0.8568
AT1G35560	TCP	TCP23	TCP family transcription facto...		Potri.013G110700 [exp]	12.12	0.8306
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	13.41	0.8575
AT2G20560			DNAJ heat shock family protein...		Potri.007G136400 [exp]	14.07	0.8461

Compare expression of checked genes

Potri.010G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.