Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CUL3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26830 1345 / 0 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 1323 / 0 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 519 / 2e-174 CUL4, ATCUL4 cullin4 (.1) AT4G02570 421 / 3e-137 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 395 / 5e-127 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 370 / 2e-117 Cullin family protein (.1) AT1G59790 133 / 1e-33 Cullin family protein (.1) AT1G59800 107 / 6e-26 Cullin family protein (.1) AT4G12100 74 / 8e-14 Cullin family protein (.1) AT3G46910 71 / 3e-13 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148300 [exp] 1479 / 0 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 529 / 5e-178 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 516 / 6e-173 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217300 [exp] 427 / 3e-139 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 424 / 3e-138 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 419 / 4e-136 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 410 / 1e-132 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 68 / 2e-13 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.013G020000 [exp] 67 / 7e-12 AT4G02570 172 / 2e-48 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036739 [exp] 1421 / 0 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 1419 / 0 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 1410 / 0 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 1409 / 0 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 449 / 6e-149 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10032200 [exp] 418 / 7e-136 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 417 / 2e-135 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 405 / 8e-131 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 400 / 4e-129 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10038504 [exp] 392 / 5e-128 AT5G46210 913 / 0.0 cullin4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family CL0123 [poplar] [flax] HTH PF10557 [poplar] [flax] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Potri.010G093200.1 pacid=42799784 polypeptide=Potri.010G093200.1.p locus=Potri.010G093200 ID=Potri.010G093200.1.v4.1 annot-version=v4.1 ATGAGCAATCAAAAGAAGAGGAATTTCCAGATAGAGGCGTTTAAACACCGGGTCGTGGTGGATCCGAAATACGCCGATAAGACCTGGAAGATTTTGGAGC ACGCTATCCATGAGATTTACAATCATAATGCTAGTGGTCTCAGTTTCGAAGAGCTCTATAGAAATGCCTACAACATGGTGCTCCACAAATTTGGCGAGAA GTTGTATAATGGTCTGGTTGCTACTATGACTTCACATTTAAGAGAAATATCAAAATCTGTTGAGGCTGCTCAAGGGGATTCGTTCTTGGAGGAGCTGAAC AGGAAATGGAATGATCATAACAAAGCATTGCAAATGATCAGGGACATATTGATGTATATGGATAGAACATATATTCCAAGTACGCATAAAACCCCTGTTC ATGAACTTGGGCTTAACTTGTGGAGGGATAACATAATACACTCCAGCAAAATTCAGACAAGGCTTCAAAATACACTTCTTGAACTGGTTCACAGGGAACG GACTGGTGAAGTTATTGACCGAGGTTTGATGAGGAACATTGTCAAGATGCTAATGGATCTAGGCTCTTCTGTTTACCAAGAAGACTTTGAGAAGCCATTT CTTGAGGTTTCAGCCGAGTTTTATAGGGGTGAATCTCAGAAGTTCATTGAGTGCTGTGATTGTGGTGATTATCTGAAGAAAGCTGAGAAACGTTTAAATG AAGAGATAGAGAGAGTGACTCATTATTTGGATTCCAAGAGTGAAGTCAAGATAACTAATGTGGTGGAGAAGGAGATGATTGCTAACCACATGCTGAGACT AGTCCACATGGAGAATTCAGGCTTGGTAAACATGCTTCTTGATGATAAATATGAAGACTTGGGACGGATGTACAACCTGTTCCGCCGGGTTCCTAATGGT CTTTCAACAATAAGAGAAGTGATGACTTCTCACCTCAGGGAGACTGGCAAGCAACTTGTTACTGATCCAGAAAGGTTGAAGGATCCAGTGGAATTTGTTC AGCGTTTGTTGGATGAAAAAGACAAGTACGATAGCATCATAAGCAATGCATTTAACAATGACAAGACATTCCAGAATGCTTTGAACTCCTCTTTTGAATA TTTCATTAATTTGAATGCTCGTTCTCCTGAGTTCATTTCATTGTTCGTGGATGACAAACTACGCAAAGGTCTAAAAGGAGTTAGTGAGGAGGATGTTGAG ATCATTCTTGACAAGGTGATGATGCTGTTCCGCTATTTGCAGGAGAAAGATGTATTCGAAAAGTATTACAAGCAGCATTTGGCTAAGCGGCTGTTGTCAG GGAAAACGGTCTCTGATGATGCGGAGAGAAGTCTGATAGTCAAACTTAAGACAGAATGTGGATACCAGTTCACTTCGAAATTAGAAGGCATGTTTACAGA CATGAAAACCTCCCAGGATACAATGCAAGGGTTTTATGCAAGCCACGTGGAGCTAGGGGATGCACGGACACTGGTTGTTCAGGTTTTGACAACAGGGTCT TGGCCCACTCAACCTGGTGTTACATGCAACCTGCCTGCAGAAATGTCAGCACTATGTGAGAAGTTCAGGTCATATTACCTTGGGACCCATACTGGTCGGA GATTGTCATGGCAAACTAATATGGGCACAGCAGACGTTAAAGCAACCTTTGGGAAGGGTGGTCAGAAGCACGAGTTGAATGTCTCCACTTACCAAATGTG TGTTCTCATGCTGTTTAATAATGCTGAGAGGCTTAGCTACAAAGAGATTGAGCAGGCAACTGAGATTCCTGCCGCAGACTTGAAGAGGTGCTTGCAATCC ATGGCTTGTGTGAAGGGAAAGAATGTTCTTCGCAAAGAACCCATGAGTAAAGACATTGGTGAGGAAGATGTTTTTTTTGTTAATGACAAATTCACAAGCA AATTCTATAAGGTGAAGATAGGAACTGTAGTTGCACAGAAGGAATCAGAACCTGAAAAGCAGGAGACGCGGCAGAGAGTAGAGGAGGACCGGAAGCCTCA GATAGAAGCTGCAATAGTTAGGATTATGAAGTCGAGGAGGGTATTGGATCACAACAATATAATCACTGAGGTCACAAAGCAGTTGCAGTCACGTTTCCTA GCGAACCCCACAGAGATTAAGAAAAGGATTGAATCCCTTATAGAACGAGATTTCTTGGAGAGGGATAGTGTGGACAGAAAACTGTATCGATATCTTGCTT AA
AA sequence Show only first row Show all	>Potri.010G093200.1 pacid=42799784 polypeptide=Potri.010G093200.1.p locus=Potri.010G093200 ID=Potri.010G093200.1.v4.1 annot-version=v4.1 MSNQKKRNFQIEAFKHRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYNGLVATMTSHLREISKSVEAAQGDSFLEELN RKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIIHSSKIQTRLQNTLLELVHRERTGEVIDRGLMRNIVKMLMDLGSSVYQEDFEKPF LEVSAEFYRGESQKFIECCDCGDYLKKAEKRLNEEIERVTHYLDSKSEVKITNVVEKEMIANHMLRLVHMENSGLVNMLLDDKYEDLGRMYNLFRRVPNG LSTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDSIISNAFNNDKTFQNALNSSFEYFINLNARSPEFISLFVDDKLRKGLKGVSEEDVE IILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASHVELGDARTLVVQVLTTGS WPTQPGVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGTADVKATFGKGGQKHELNVSTYQMCVLMLFNNAERLSYKEIEQATEIPAADLKRCLQS MACVKGKNVLRKEPMSKDIGEEDVFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIITEVTKQLQSRFL ANPTEIKKRIESLIERDFLERDSVDRKLYRYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	0	1	CUL3.2
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.008G148300 [exp]	1.00	0.7669	CUL3.1
AT1G26580			unknown protein		Potri.008G094400 [exp]	2.44	0.6144
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	11.66	0.6126
AT3G47670			Plant invertase/pectin methyle...		Potri.001G108200 [exp]	13.41	0.5986
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	14.21	0.6166
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	15.29	0.5464
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	21.21	0.5409
AT5G16510		RGP5	reversibly glycosylated protei...		Potri.019G051700 [exp]	22.36	0.5201
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.007G093600 [exp]	24.18	0.6106	Pt-UBP3.1
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	25.65	0.5922

Compare expression of checked genes

Potri.010G093200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.