Plant FIBer expression Database

Potri.010G093300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14345 194 / 3e-63 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G148266
[exp]
49 / 1e-07 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037201
[exp]
186 / 5e-60 AT1G14345 229 / 8e-77 NAD(P)-linked oxidoreductase superfamily protein (.1)
Lus10036729
[exp]
92 / 8e-24 AT1G14345 100 / 4e-27 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0266 PH PF03703 bPH_2 Bacterial PH domain
Representative CDS sequence
>Potri.010G093300.1 pacid=42796874 polypeptide=Potri.010G093300.1.p locus=Potri.010G093300 ID=Potri.010G093300.1.v4.1 annot-version=v4.1
ATGGCATCTGTTCCTCTCCTCTCTCCCTCTACCACCGCCGCCGCTTCCTGCAGAACCTCCTCCTCCCTTACCCACCAGTTGCTTCATCTTTCCTCCAAGG
TCCCATTCCATACCTTCCCCGCAAGAAATCACCGACTAATCACCAAGCTTAACGTGTCCTCTCCCACCAACAAACCTGCCACCTCCACCACTTCGAAAAA
ACCCATTGAAGAAATCATCTTTTTCGACGGCGGAGCCCACTACGGTGACCTCCTGGCCAACCTGCTACTGGGCTTCACTCTTCTCTGGCTGCCATTGACT
CTAGCTGCAGTTTCAAGGGCATTTTATCTTAGATACAGGTTCACCAACCTGAGGGTGACAGTTATCTCAGGGCTAACGGGTCAAGATAGGAGTGATTTCT
CCTACAAGGTGATAAAAGATGTTCAGGTTGTGCCGCGTTTCATAGGTGAATGGGGTGATGTAGTTATTACTTTGAAAGATGGTACTAAAGTGGATCTTAG
GAGTGTTCCTAAATTCAGAGAAATTGCCAAGTATTGTCTCTCTATGGCCGAGAAGCCTGTGGTTATGAAGGAGGATAGTACAGGACCCAGAGGGTTTTAA
AA sequence
>Potri.010G093300.1 pacid=42796874 polypeptide=Potri.010G093300.1.p locus=Potri.010G093300 ID=Potri.010G093300.1.v4.1 annot-version=v4.1
MASVPLLSPSTTAAASCRTSSSLTHQLLHLSSKVPFHTFPARNHRLITKLNVSSPTNKPATSTTSKKPIEEIIFFDGGAHYGDLLANLLLGFTLLWLPLT
LAAVSRAFYLRYRFTNLRVTVISGLTGQDRSDFSYKVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREIAKYCLSMAEKPVVMKEDSTGPRGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G14345 NAD(P)-linked oxidoreductase s... Potri.010G093300
[exp]
0 1
AT4G20360 AtRab8D, AtRABE... RAB GTPase homolog E1B (.1) Potri.003G121600
[exp]
1.41 0.9895
AT4G22830 unknown protein Potri.001G114800
[exp]
2.82 0.9849
AT3G16250 PnsB3, NDF4 Photosynthetic NDH subcomplex... Potri.001G186800
[exp]
2.82 0.9832
AT3G26040 HXXXD-type acyl-transferase fa... Potri.011G124156
[exp]
3.87 0.9851
AT3G27830 RPL12-A ribosomal protein L12-A (.1) Potri.001G346100
[exp]
4.24 0.9857 Pt-RPL12.6
AT1G74880 NdhO, NDH-O NADH dehydrogenase-like comple... Potri.007G106500
[exp]
5.47 0.9846
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Potri.014G153000
[exp]
9.38 0.9808
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Potri.004G140500
[exp]
9.79 0.9839
AT3G26040 HXXXD-type acyl-transferase fa... Potri.011G124128
[exp]
9.79 0.9787
AT1G79850 PDE347, CS17, P... PLASTID RIBOSOMAL SMALL SUBUNI... Potri.001G184000
[exp]
9.94 0.9809

Potri.010G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.