Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATHB13.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69780 308 / 5e-105 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT1G26960 270 / 3e-90 HD ATHB23 homeobox protein 23 (.1) AT5G15150 191 / 8e-59 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 177 / 1e-53 HD ATHB20 homeobox protein 20 (.1) AT5G65310 145 / 3e-41 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 132 / 2e-36 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT3G01470 132 / 2e-36 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT2G22430 132 / 3e-36 HD ATHB6 homeobox protein 6 (.1) AT2G46680 105 / 2e-26 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT3G61890 103 / 7e-26 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148200 [exp] 476 / 2e-171 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.017G081700 [exp] 299 / 2e-101 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.015G065400 [exp] 147 / 5e-42 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 144 / 1e-40 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.002G100600 [exp] 134 / 2e-37 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.007G097100 [exp] 135 / 3e-37 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 134 / 5e-37 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.008G194400 [exp] 127 / 2e-34 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.005G161500 [exp] 120 / 3e-32 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036730 [exp] 370 / 3e-129 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10037200 [exp] 358 / 1e-124 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 299 / 1e-101 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10012845 [exp] 295 / 6e-100 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10042180 [exp] 133 / 2e-36 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 130 / 9e-36 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 130 / 1e-35 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 130 / 1e-35 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 128 / 8e-35 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10036674 [exp] 127 / 4e-34 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.010G093400.1 pacid=42798869 polypeptide=Potri.010G093400.1.p locus=Potri.010G093400 ID=Potri.010G093400.1.v4.1 annot-version=v4.1 ATGACGTGCAATGGGATGGCTTTCTTCCCAACAAATTTCATGCTCCAGATTTCTCATGATCAAGATGATCATCAACCTCCCACATCTCTCAATCCAATTC TACCCTCACCCCAAGATTTCCATGGGGTGGCATCATTTATAGGGAAGAGATCATCAATGTCATTTTCAGGGATTGATGCGTGTCATGAAGAAGGCAATGG AGAAGATGAGTTGTCTGATGATGGCTCACAAGCAGGAGAAAAGAAGAGGAGGCTCAATATGGAACAAGTCAAGACTCTTGAAAAAAACTTTGAGTTGGGT AACAAGCTTGAACCTGAGAGAAAAATGCAACTGGCTAGAGCTCTTGGTCTGCAGCCAAGACAGATTGCTATATGGTTCCAAAACAGGAGGGCCAGATGGA AAACCAAACAACTAGAGAAAGATTATGATCTCCTCAAGAGACAGTTTGATGCTATTAAAGCCGAAAACGATGCGCTACAAGCACAGAACCAGAAACTTCA TGCGGAGGTAATTAGCTGCAAGAATTTGACACATCATCGACTGGCTATAGAGATATTGACACTGAAAAGCAGAGAACCGACTGAACCTATCAACCTCAAC AAAGAAACAGAGGGTTCTAGCAGTAATAGAAGTGAAAACAGCTCTGATATCAAGTTGGATATCTCGAGGACGCCAGCAATTGACAGCCCTCTATCTAATC ATCATCCAACGAGTAGATCCTTTTTCCCCTCATCATCATCATCTATAAGGCCTGCAGGCGTTGCTATAAGACCTACAGGTGTTGCTCAACTCTTCCAAAC AAACCCTTCAAGGCCTGATATTCAATGCCAGAAGATTGATCAATTAGTCAAAGAAGAAAATCTTGGCAATATGTTCTGTAGCATCGAAGATCAATCTGGA TTTTGGCCCTGGCTTGAGCAACAACATTTCAATTAA
AA sequence Show only first row Show all	>Potri.010G093400.1 pacid=42798869 polypeptide=Potri.010G093400.1.p locus=Potri.010G093400 ID=Potri.010G093400.1.v4.1 annot-version=v4.1 MTCNGMAFFPTNFMLQISHDQDDHQPPTSLNPILPSPQDFHGVASFIGKRSSMSFSGIDACHEEGNGEDELSDDGSQAGEKKRRLNMEQVKTLEKNFELG NKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAIKAENDALQAQNQKLHAEVISCKNLTHHRLAIEILTLKSREPTEPINLN KETEGSSSNRSENSSDIKLDISRTPAIDSPLSNHHPTSRSFFPSSSSSIRPAGVAIRPTGVAQLFQTNPSRPDIQCQKIDQLVKEENLGNMFCSIEDQSG FWPWLEQQHFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.010G093400 [exp]	0	1	ATHB13.3
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.006G085900 [exp]	4.89	0.8375	AS1.1
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.005G161500 [exp]	5.19	0.8371
AT5G59010			Protein kinase protein with te...		Potri.001G246400 [exp]	5.38	0.8095
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.006G141100 [exp]	7.68	0.8782
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	9.69	0.7901	Pt-ALDH3.2
AT3G11690			unknown protein		Potri.016G066300 [exp]	11.74	0.7344
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	14.07	0.7772
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Potri.017G094100 [exp]	14.38	0.8170
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072866 [exp]	14.42	0.8371
AT1G60060			Serine/threonine-protein kinas...		Potri.010G096400 [exp]	15.09	0.8420

Compare expression of checked genes

Potri.010G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.