Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SUC3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02860 815 / 0 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) AT1G22710 405 / 1e-135 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT5G06170 404 / 2e-135 ATSUC9 sucrose-proton symporter 9 (.1) AT1G71890 402 / 2e-134 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G66570 396 / 3e-132 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT1G09960 396 / 5e-132 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT1G71880 395 / 1e-131 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT2G14670 390 / 3e-130 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 382 / 4e-127 ATSUC6 sucrose-proton symporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148100 [exp] 1052 / 0 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.002G106900 [exp] 414 / 4e-139 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.019G085800 [exp] 227 / 5e-67 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 224 / 8e-66 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030492 [exp] 867 / 0 AT2G02860 863 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10012844 [exp] 470 / 5e-159 AT2G02860 696 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10032815 [exp] 429 / 1e-144 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10029766 [exp] 401 / 1e-133 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10007702 [exp] 394 / 1e-131 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028616 [exp] 390 / 1e-129 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 390 / 3e-129 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 388 / 7e-129 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 386 / 6e-128 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007691 [exp] 239 / 1e-73 AT1G09960 425 / 1e-147 sucrose transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF13347 [poplar] [flax] MFS_2 MFS/sugar transport protein
Representative CDS sequence Show only first row Show all	>Potri.010G093600.2 pacid=42800274 polypeptide=Potri.010G093600.2.p locus=Potri.010G093600 ID=Potri.010G093600.2.v4.1 annot-version=v4.1 ATGGAGTCGGCACCGATTCGGGTACCGTACCGGAAACTTAAGAAGGAGATAGAGGTAGAAATGGTGAGTTTGGAAGTGGAGTCGTCTCCTTCTCCTTCTC CTCCTCCTCCTCGAATCCAATCTCCTCTTAATCCTAATTCTAATGGAGATTTCAGATCTCAAACCACCAAACATCAAATAAGCTTCACCACTCTTGTTCT CAGCTGTACGGTGGCCGCTGGCGTTCAATTCGGCTGGGCCTTGCAGCTCTCTCTCCTCACTCCCTATATTCAGACACTTGGGATAGGACATGCTTTTTCA TCCTTCATTTGGCTCTGCGGTCCTATTACAGGCCTCGTGGTTCAACCTTGCGTTGGTATTTGGAGTGATAAATGCTCTTCAAAATTTGGAAGAAGACGCC CATTTATTCTTGCAGGAGCACTAATGATCTCTATTGCTGTGATAATAATCGGATTTTCCGCAGACATTGGATATGTGTTAGGGGATACAGAGGAGCATTG CAGTAAATTCAAGGGCACTCGAATGAGGGCGGCTTTTGTCTTTGTTATTGGCTTCTGGATGCTGGATCTTGCTAACAATACAGTGCAGGGACCAGCCCGT GCACTTCTGGCTGATTTATCAGGTCCTGATCAACACAATATATCAAATGCTGTATTTTGCTCATGGATGGCTGTTGGAAACATTTTAGGATTTTCAGCTG GTGCTAGTGGGAGTTGGAGCAGATGGTTTCCTTTCTTGATGAATAGAGCTTGTTGTGAAGCTTGCGGAAATCTTAAAGCAGCATTTCTCGTAGCAGTAGT CTTCCTCCTGTTTTGTACTCTTGTGACTCTATATTTTGCGGATGAGGTTCCACTAAATGTTAATCAACCACGCCATTTATCAGATTCTGCTCCATTGTTG AATGATCCACAACAAAACAGCCATGAACTTTCAAAATCTGAGTTTCACACGCCTGGTCTTGACAATTTGAGTGGGAACAGCACCGACCATGACTATGAAC CGAGTATGAATTCAAAGCATGCCAACTCTGTAGGGGGTCAAAATGAAAATTTCAGTGATGGCCCAGGAGCTGTGATGGTCAATTTATTAACCAGTTTAAG GCATCTACCTCCTGGAATGCATTCAGTGCTTCTTGTTATGGCATTAACTTGGTTGTCATGGTTCCCCTTCTTTCTTTTTGATACGGATTGGATGGGAAGA GAAGTTTATCATGGAGATCCAAAGGGGACTTCTAATGAAGTGAAGTTGTATGATCAAGGAGTCAGAGAAGGTGCATTTGGTTTGCTGTTGAATTCTGTGG TTCTTGGCATTAGTTCGTTCTTGATTGAGCCAATGTGTAAGAAGTTGGGGTCAAGACTTGTATGGGCAATGAGCAATTTTATTGTATTTGTCTGCATGGC AGGCACGGCTATTATTAGTTTGATATCAGTAGGTGCATATTCTGAAGGAATCGAACATGTAATTGGAGGGAATGCACCAATCAGGATAGCTTCCTTGATT GTATTTGCTCTTCTTGGATTTCCTCTCGCTATTACCTATAGTGTTCCATTTTCTGTCACAGCAGAGTTGACTGCTGATACTGGTGGTGGGCAAGGATTGG CTATAGGAGTTCTCAATCTTGCAATAGTTATTCCACAGATGATTGTATCCATTGGTGCCGGTCCATGGGATGCGCTCTTTGGTGGAGGAAATATACCAGC GTTTGTTCTGGCTTCTGTGTGTGCTCTTGCAGCTGGTGTTTATGCAGCTCTCAAGCTGCCAAATCTTTCAAGCAGTTCCTTCAGTGGTTTTCATTTTGGC TAA
AA sequence Show only first row Show all	>Potri.010G093600.2 pacid=42800274 polypeptide=Potri.010G093600.2.p locus=Potri.010G093600 ID=Potri.010G093600.2.v4.1 annot-version=v4.1 MESAPIRVPYRKLKKEIEVEMVSLEVESSPSPSPPPPRIQSPLNPNSNGDFRSQTTKHQISFTTLVLSCTVAAGVQFGWALQLSLLTPYIQTLGIGHAFS SFIWLCGPITGLVVQPCVGIWSDKCSSKFGRRRPFILAGALMISIAVIIIGFSADIGYVLGDTEEHCSKFKGTRMRAAFVFVIGFWMLDLANNTVQGPAR ALLADLSGPDQHNISNAVFCSWMAVGNILGFSAGASGSWSRWFPFLMNRACCEACGNLKAAFLVAVVFLLFCTLVTLYFADEVPLNVNQPRHLSDSAPLL NDPQQNSHELSKSEFHTPGLDNLSGNSTDHDYEPSMNSKHANSVGGQNENFSDGPGAVMVNLLTSLRHLPPGMHSVLLVMALTWLSWFPFFLFDTDWMGR EVYHGDPKGTSNEVKLYDQGVREGAFGLLLNSVVLGISSFLIEPMCKKLGSRLVWAMSNFIVFVCMAGTAIISLISVGAYSEGIEHVIGGNAPIRIASLI VFALLGFPLAITYSVPFSVTAELTADTGGGQGLAIGVLNLAIVIPQMIVSIGAGPWDALFGGGNIPAFVLASVCALAAGVYAALKLPNLSSSSFSGFHFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.010G093600 [exp]	0	1	SUC3.1
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	6.00	0.8636
AT4G24840			unknown protein		Potri.012G096100 [exp]	8.18	0.8772
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	8.36	0.8353
AT5G36230			ARM repeat superfamily protein...		Potri.019G053600 [exp]	10.95	0.8272
AT5G08560			transducin family protein / WD...		Potri.002G055800 [exp]	13.41	0.7988
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	15.49	0.8626
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	20.24	0.8694
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.005G110600 [exp]	22.04	0.7814
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.001G361300 [exp]	25.80	0.8376
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	32.86	0.8596

Compare expression of checked genes

Potri.010G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.