Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APK2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02800 627 / 0 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 595 / 0 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G26970 536 / 0 Protein kinase superfamily protein (.1) AT1G69790 530 / 0 Protein kinase superfamily protein (.1) AT1G07570 490 / 3e-173 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 483 / 2e-170 APK1B protein kinase 1B (.1.2.3) AT5G02290 474 / 5e-167 NAK Protein kinase superfamily protein (.1.2) AT1G74490 445 / 2e-155 Protein kinase superfamily protein (.1) AT3G55450 440 / 7e-154 PBL1 PBS1-like 1 (.1.2) AT2G39660 440 / 1e-153 BIK1 botrytis-induced kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148000 [exp] 752 / 0 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.009G031300 [exp] 499 / 1e-176 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 496 / 1e-175 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G056400 [exp] 491 / 2e-173 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 489 / 8e-173 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 481 / 1e-169 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G020700 [exp] 442 / 1e-154 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1) Potri.007G062700 [exp] 424 / 5e-147 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G127300 [exp] 424 / 5e-147 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012850 [exp] 643 / 0 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10030496 [exp] 570 / 0 AT2G02800 551 / 0.0 protein kinase 2B (.1.2) Lus10042192 [exp] 504 / 2e-178 AT2G02800 479 / 3e-168 protein kinase 2B (.1.2) Lus10008627 [exp] 501 / 2e-174 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10024391 [exp] 488 / 3e-172 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016537 [exp] 486 / 2e-171 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10010835 [exp] 484 / 7e-171 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040806 [exp] 481 / 2e-169 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10002697 [exp] 480 / 2e-169 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10023794 [exp] 479 / 2e-169 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G093700.2 pacid=42798243 polypeptide=Potri.010G093700.2.p locus=Potri.010G093700 ID=Potri.010G093700.2.v4.1 annot-version=v4.1 ATGGGCAACTGCTTAGATTCTTCTTCTGCTAAAGTAGATTCCACCCAGAGCTCACATAATCCTGGAGCCTCAAGAATTTCCAGCAGAACCAGCCATTCTT CAGTTCCATCTAGTCTGACCATCCCATCATACAGTGGAAGGAGCAGTGAATGTCTTCCTACACCAAGGAGTGAAGGTGAAATATTGTCATCGCCAAATTT AAAAGCTTTCTCATTCAATGAGCTAAAAAATGCTACCAGAAACTTCCGTCCCGACAGTCTTCTGGGTGAAGGTGGCTTTGGCTATGTTTTCAAAGGATGG ATTGATGAACACACTCTTACTGCTGCAAAGCCTGGATCGGGAATGGTTGTTGCTGTCAAGAAGCTTAAACCTGAAGGTTTCCAAGGCCACAAGGAGTGGT TGACAGAAGTTAATTATCTCGGCCAACTTCATCATCCAAATCTGGTTAAATTGATTGGATACTGCTTGGAAGGTGAGAACCGGCTTCTGGTCTATGAGTT CATGCCTAAAGGGAGCTTAGAGAATCATCTGTTCAGAAGAGGACCACAGCCACTTTCATGGGCGATAAGAATCAAAGTGGCCATAGGTGCTGCCAGAGGA CTCTCTTTTCTTCATGATGCAAAATCACAAGTCATATACCGTGACTTCAAGGCATCTAATATTCTACTAGATGCGGAATTTAATGCAAAACTTTCTGATT TTGGTTTGGCCAAGGCAGGCCCTACTGGTGATAGGACTCATGTGTCCACTCAAGTTATGGGTACTCATGGGTATGCAGCACCTGAATACGTTGCTACAGG TCGGTTGACAGCCAAAAGTGATGTATACAGCTTCGGGGTTGTATTGCTGGAATTCCTGTCTGGGCGACGCGCTGTTGATAAATCTAAGGTGGGTGTGGAG CAGAATCTGGTAGACTGGGTGAAACCGTATCTGGGTGACAAAAGGAAATTATTCCGAATTATGGACACCAAATTGGGGGGACAATATCCTCAGAAAGGAG CCTTCATGGCTGCTAACCTGGCTTTACAGTGCCTAAGCACTGAAGCTAAAGTCAGGCCTCGAATGTCAGAAGTATTAGCAACACTGGAGCAAATTGAATC CCCAAAAGGTGCAGTTAAAAACATCCAATTAGACCATCAAACAGTTCAGACTCCTGTCCGACAGTCCCCAATGAGACACCATCGCTCTCCTGTGATTCCA ACGGCCAGTGCCTCCCCGCTGCCATCCCACCACCAATCTCCACGATTACGATAA
AA sequence Show only first row Show all	>Potri.010G093700.2 pacid=42798243 polypeptide=Potri.010G093700.2.p locus=Potri.010G093700 ID=Potri.010G093700.2.v4.1 annot-version=v4.1 MGNCLDSSSAKVDSTQSSHNPGASRISSRTSHSSVPSSLTIPSYSGRSSECLPTPRSEGEILSSPNLKAFSFNELKNATRNFRPDSLLGEGGFGYVFKGW IDEHTLTAAKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWAIRIKVAIGAARG LSFLHDAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLEFLSGRRAVDKSKVGVE QNLVDWVKPYLGDKRKLFRIMDTKLGGQYPQKGAFMAANLALQCLSTEAKVRPRMSEVLATLEQIESPKGAVKNIQLDHQTVQTPVRQSPMRHHRSPVIP TASASPLPSHHQSPRLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.010G093700 [exp]	0	1	APK2.1
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	1.73	0.9211	APG9.1
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	2.82	0.8942
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	4.24	0.8731
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	5.47	0.8636
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.002G163100 [exp]	5.65	0.8556
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.012G136100 [exp]	6.24	0.8577
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.001G296000 [exp]	7.54	0.8828
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	8.06	0.8736
AT2G32760			unknown protein		Potri.017G056800 [exp]	8.94	0.8307
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	9.79	0.8621

Compare expression of checked genes

Potri.010G093700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.